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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GAA
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462487 (4 seq.)
>FU090900055
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
97719
97632
-
Phe
GAA
[ENA]
¡û
>FU090900056
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
75509
75422
-
Phe
GAA
[ENA]
¡û
>FU090900060
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1048157
1048066
-
Phe
GAA
[ENA]
¡û
>FU090900061
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
514325
514236
-
Phe
GAA
[ENA]
¡û
Identical group No.462490 (2 seq.)
>SC0800016
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
374871
374961
+
Phe
GAA
[ENA]
¡û
>SC0900054
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
1095458
1095367
-
Phe
GAA
[ENA]
¡û
Identical group No.490188 (28 seq.)
>FG090800123
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
398685
398595
-
Phe
GAA
[ENA]
¡û
>FU090900004
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
283748
283656
-
Phe
GAA
[ENA]
¡û
>FU090900011
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
950864
950776
-
Phe
GAA
[ENA]
¡û
>FU090900219
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1826075
1825984
-
Phe
GAA
[ENA]
¡û
>FU090900268
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1742063
1742154
+
Phe
GAA
[ENA]
¡û
>FU090900277
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
756155
756066
-
Phe
GAA
[ENA]
¡û
>FU090900289
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1667311
1667402
+
Phe
GAA
[ENA]
¡û
>FU090900313
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1777472
1777381
-
Phe
GAA
[ENA]
¡û
>SC0800001
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
36395
36485
+
Phe
GAA
[ENA]
¡û
>SC0800003
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
158001
157910
-
Phe
GAA
[ENA]
¡û
>SC0800006
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
440813
440720
-
Phe
GAA
[ENA]
¡û
>SC0800008
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
237941
237850
-
Phe
GAA
[ENA]
¡û
>SC0800009
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
358572
358481
-
Phe
GAA
[ENA]
¡û
>SC0800015
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
352279
352369
+
Phe
GAA
[ENA]
¡û
>SC0800019
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
560286
560195
-
Phe
GAA
[ENA]
¡û
>SC0800020
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
622629
622536
-
Phe
GAA
[ENA]
¡û
>FG091800050
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
689907
689809
-
Phe
GAA
[ENA]
¡û
>FG091900169
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
817669
817581
-
Phe
GAA
[ENA]
¡û
>FG091900175
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1809420
1809332
-
Phe
GAA
[ENA]
¡û
>FG091900184
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
1377232
1377144
-
Phe
GAA
[ENA]
¡û
>FG091900188
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
734682
734594
-
Phe
GAA
[ENA]
¡û
>FG091900228
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
457696
457787
+
Phe
GAA
[ENA]
¡û
>FG091900231
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
615517
615606
+
Phe
GAA
[ENA]
¡û
>FG091900238
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1157529
1157618
+
Phe
GAA
[ENA]
¡û
>FG091900240
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1179164
1179253
+
Phe
GAA
[ENA]
¡û
>FG091900270
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1181559
1181468
-
Phe
GAA
[ENA]
¡û
>FG091900279
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
563150
563061
-
Phe
GAA
[ENA]
¡û
>FG091900283
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1403926
1404017
+
Phe
GAA
[ENA]
¡û
Identical group No.510143 (6 seq.)
>FG090800005
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
155457
155554
+
Phe
GAA
[ENA]
¡û
>FG090800006
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
314509
314412
-
Phe
GAA
[ENA]
¡û
>FG090800007
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
219170
219267
+
Phe
GAA
[ENA]
¡û
>FG090800008
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
621389
621292
-
Phe
GAA
[ENA]
¡û
>FG090800013
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
948981
948884
-
Phe
GAA
[ENA]
¡û
>FG090800015
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
504415
504318
-
Phe
GAA
[ENA]
¡û
Identical group No.510145 (6 seq.)
>FU090900170
CM000437
Ascomycota
Pichia stipitis CBS 6054
159076
158987
-
Phe
GAA
[ENA]
¡û
>FU090900171
CM000437
Ascomycota
Pichia stipitis CBS 6054
146861
146772
-
Phe
GAA
[ENA]
¡û
>FU090900175
CP000498
Ascomycota
Pichia stipitis CBS 6054
1575526
1575615
+
Phe
GAA
[ENA]
¡û
>FU090900176
CP000499
Ascomycota
Pichia stipitis CBS 6054
1377174
1377263
+
Phe
GAA
[ENA]
¡û
>FU090900177
CP000500
Ascomycota
Pichia stipitis CBS 6054
790737
790826
+
Phe
GAA
[ENA]
¡û
>FG091900221
CP000497
Ascomycota
Pichia stipitis CBS 6054
1296549
1296460
-
Phe
GAA
[ENA]
¡û
Identical group No.510146 (1 seq.)
>FU090900241
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2654472
2654566
+
Phe
GAA
[ENA]
¡û
Identical group No.528430 (1 seq.)
>FG090100632
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
2576448
2576375
-
Phe
GAA
[ENA]
¡û
Identical group No.528432 (8 seq.)
>FU090900098
CR382134
Ascomycota
Debaryomyces hansenii CBS767
699048
698958
-
Phe
GAA
[ENA]
¡û
>FU090900104
CR382137
Ascomycota
Debaryomyces hansenii CBS767
918182
918272
+
Phe
GAA
[ENA]
¡û
>FU090900105
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1040357
1040447
+
Phe
GAA
[ENA]
¡û
>FU090900108
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1246807
1246717
-
Phe
GAA
[ENA]
¡û
>FU090900112
CR382138
Ascomycota
Debaryomyces hansenii CBS767
559595
559685
+
Phe
GAA
[ENA]
¡û
>FU090900113
CR382138
Ascomycota
Debaryomyces hansenii CBS767
609792
609882
+
Phe
GAA
[ENA]
¡û
>FU090900123
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1382044
1382134
+
Phe
GAA
[ENA]
¡û
>FU090900127
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1056677
1056587
-
Phe
GAA
[ENA]
¡û
Identical group No.541142 (5 seq.)
>FG090100415
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
386047
386121
+
Phe
GAA
[ENA]
¡û
>FG090100461
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
597877
597949
+
Phe
GAA
[ENA]
¡û
>FG090100464
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
950420
950492
+
Phe
GAA
[ENA]
¡û
>FG090100467
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1248065
1248137
+
Phe
GAA
[ENA]
¡û
>FG091100110
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1524116
1524188
+
Phe
GAA
[ENA]
¡û
Identical group No.554017 (4 seq.)
>FG090100674
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1142264
1142191
-
Phe
GAA
[ENA]
¡û
>FG090100683
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
331300
331227
-
Phe
GAA
[ENA]
¡û
>FG092110013
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3701556
3701629
+
Phe
GAA
[ENA]
¡û
>FG092110026
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3752406
3752333
-
Phe
GAA
[ENA]
¡û
Identical group No.614164 (2 seq.)
>FG091900248
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1422259
1422349
+
Phe
GAA
[ENA]
¡û
>FG091900250
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1434549
1434639
+
Phe
GAA
[ENA]
¡û
Identical group No.629592 (1 seq.)
>FU090900085
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
97210
97297
+
Phe
GAA
[ENA]
¡û
Identical group No.772263 (1 seq.)
>FG090100362
AL590443
Microsporidia
Encephalitozoon_cuniculi_GB-M1
132248
132177
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK