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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GCA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237503 (3 seq.)
>FG090800017
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
79263
79172
-
Cys
GCA
[ENA]
¡û
>FG090800061
AE017356
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
461000
461087
+
Cys
GCA
[ENA]
¡û
>FG090800062
AE017356
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
461156
461246
+
Cys
GCA
[ENA]
¡û
Identical group No.554015 (2 seq.)
>FG092110005
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1421148
1421222
+
Cys
GCA
[ENA]
¡û
>FG092110012
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3700664
3700738
+
Cys
GCA
[ENA]
¡û
Identical group No.554016 (1 seq.)
>FG092110009
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
2510537
2510611
+
Cys
GCA
[ENA]
¡û
Identical group No.675915 (3 seq.)
>FG090100523
CM000437
Ascomycota
Pichia stipitis CBS 6054
2504117
2504044
-
Cys
GCA
[ENA]
¡û
>FG090100542
CP000496
Ascomycota
Pichia stipitis CBS 6054
387539
387466
-
Cys
GCA
[ENA]
¡û
>FG091100080
CP000496
Ascomycota
Pichia stipitis CBS 6054
1355895
1355822
-
Cys
GCA
[ENA]
¡û
Identical group No.675938 (2 seq.)
>FG091100029
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
914382
914309
-
Cys
GCA
[ENA]
¡û
>FG091100050
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1551916
1551842
-
Cys
GCA
[ENA]
¡û
Identical group No.687807 (8 seq.)
>FG090100688
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
643269
643341
+
Cys
GCA
[ENA]
¡û
>FG090100711
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
270275
270347
+
Cys
GCA
[ENA]
¡û
>FG090100712
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
271052
271123
+
Cys
GCA
[ENA]
¡û
>FG090100739
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
288874
288803
-
Cys
GCA
[ENA]
¡û
>FG090100743
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
677051
677122
+
Cys
GCA
[ENA]
¡û
>FG091100128
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1622542
1622614
+
Cys
GCA
[ENA]
¡û
>FG091100132
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1822793
1822721
-
Cys
GCA
[ENA]
¡û
>FG091100140
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1319325
1319254
-
Cys
GCA
[ENA]
¡û
Identical group No.698761 (16 seq.)
>WENV170659331
JXWR01003451
[JXWR] soil metagenome; rice field; ambient CO2
1296
1369
+
Cys
GCA
[ENA]
¢þ
>WENV170659405
JXWR01005125
[JXWR] soil metagenome; rice field; ambient CO2
13214
13141
-
Cys
GCA
[ENA]
¢þ
>WENV170659564
JXWR01010345
[JXWR] soil metagenome; rice field; ambient CO2
474
547
+
Cys
GCA
[ENA]
¢þ
>WENV170659654
JXWR01020077
[JXWR] soil metagenome; rice field; ambient CO2
550
624
+
Cys
GCA
[ENA]
¢þ
>WENV170659714
JXWR01043619
[JXWR] soil metagenome; rice field; ambient CO2
47
120
+
Cys
GCA
[ENA]
¢þ
>FG090100254
CR382134
Ascomycota
Debaryomyces hansenii CBS767
877254
877327
+
Cys
GCA
[ENA]
¡û
>FG090100315
CR382138
Ascomycota
Debaryomyces hansenii CBS767
791049
791120
+
Cys
GCA
[ENA]
¡û
>FG090100324
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1818162
1818089
-
Cys
GCA
[ENA]
¡û
>FG090100347
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1891117
1891044
-
Cys
GCA
[ENA]
¡û
>FG090100426
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
835832
835759
-
Cys
GCA
[ENA]
¡û
>FG090100429
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
643228
643157
-
Cys
GCA
[ENA]
¡û
>FG090100443
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
561670
561743
+
Cys
GCA
[ENA]
¡û
>SC0100012
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
643074
643000
-
Cys
GCA
[ENA]
¡û
>SC0100088
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
707184
707111
-
Cys
GCA
[ENA]
¡û
>SC0100207
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
775835
775762
-
Cys
GCA
[ENA]
¡û
>SC0100208
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
435962
435889
-
Cys
GCA
[ENA]
¡û
Identical group No.714648 (1 seq.)
>FG090100058
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
418500
418429
-
Cys
GCA
[ENA]
¡û
Identical group No.728025 (3 seq.)
>FG090100102
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
457405
457334
-
Cys
GCA
[ENA]
¡û
>FG090100134
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
269346
269418
+
Cys
GCA
[ENA]
¡û
>FG090100226
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
595748
595676
-
Cys
GCA
[ENA]
¡û
Identical group No.735076 (1 seq.)
>FG090100379
AL590448
Microsporidia
Encephalitozoon_cuniculi_GB-M1
68208
68281
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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