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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GCC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782085 (9 seq.)
>FG090100236
AE017356
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
198563
198635
+
Gly
GCC
[ENA]
¡û
>FG090100237
AE017356
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
96795
96725
-
Gly
GCC
[ENA]
¡û
>FG090800018
AE017343
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
296457
296538
+
Gly
GCC
[ENA]
¡û
>FG090800036
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
161830
161749
-
Gly
GCC
[ENA]
¡û
>FG091100070
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1375592
1375520
-
Gly
GCC
[ENA]
¡û
>FG091100071
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
726516
726586
+
Gly
GCC
[ENA]
¡û
>FG091800022
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1060538
1060457
-
Gly
GCC
[ENA]
¡û
>FG091800023
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1111357
1111276
-
Gly
GCC
[ENA]
¡û
>FG091900206
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1115277
1115179
-
Gly
GCC
[ENA]
¡û
Identical group No.785701 (29 seq.)
>WENV180280417
OBHY01005102
[OBHY] human gut metagenome; Tissue from the tricuspid valve
437
507
+
Gly
GCC
[ENA]
¢þ
>WENV181813308
OGTC01000095
[OGTC] human gut metagenome; fecal sample 2 from infant 9
3868
3798
-
Gly
GCC
[ENA]
¢þ
>WENV181813317
OGTC01000142
[OGTC] human gut metagenome; fecal sample 2 from infant 9
16017
15947
-
Gly
GCC
[ENA]
¢þ
>WENV181813327
OGTC01000156
[OGTC] human gut metagenome; fecal sample 2 from infant 9
37862
37791
-
Gly
GCC
[ENA]
¢þ
>WENV181815171
OGTJ01000050
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
30138
30068
-
Gly
GCC
[ENA]
¢þ
>WENV181815182
OGTJ01000074
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
40436
40366
-
Gly
GCC
[ENA]
¢þ
>WENV181815184
OGTJ01000079
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
14155
14226
+
Gly
GCC
[ENA]
¢þ
>WENV183511956
OMJG01022732
[OMJG] food metagenome; Cotija cheese
471
401
-
Gly
GCC
[ENA]
¢þ
>FG090100239
CR382133
Ascomycota
Debaryomyces hansenii CBS767
396142
396212
+
Gly
GCC
[ENA]
¡û
>FG090100253
CR382134
Ascomycota
Debaryomyces hansenii CBS767
874080
874150
+
Gly
GCC
[ENA]
¡û
>FG090100273
CR382137
Ascomycota
Debaryomyces hansenii CBS767
240097
240167
+
Gly
GCC
[ENA]
¡û
>FG090100306
CR382137
Ascomycota
Debaryomyces hansenii CBS767
270575
270505
-
Gly
GCC
[ENA]
¡û
>FG090100334
CR382139
Ascomycota
Debaryomyces hansenii CBS767
933998
934068
+
Gly
GCC
[ENA]
¡û
>FG090100342
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1669913
1669983
+
Gly
GCC
[ENA]
¡û
>FG090100352
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1202847
1202777
-
Gly
GCC
[ENA]
¡û
>FG090100517
CM000437
Ascomycota
Pichia stipitis CBS 6054
2104130
2104202
+
Gly
GCC
[ENA]
¡û
>FG090100554
CP000498
Ascomycota
Pichia stipitis CBS 6054
1302318
1302245
-
Gly
GCC
[ENA]
¡û
>FG090100559
CP000498
Ascomycota
Pichia stipitis CBS 6054
872146
872074
-
Gly
GCC
[ENA]
¡û
>FG090100563
CP000498
Ascomycota
Pichia stipitis CBS 6054
274143
274073
-
Gly
GCC
[ENA]
¡û
>FG090100565
CP000498
Ascomycota
Pichia stipitis CBS 6054
235547
235475
-
Gly
GCC
[ENA]
¡û
>FG090100575
CP000499
Ascomycota
Pichia stipitis CBS 6054
549505
549435
-
Gly
GCC
[ENA]
¡û
>FG090100600
CP000501
Ascomycota
Pichia stipitis CBS 6054
142916
142844
-
Gly
GCC
[ENA]
¡û
>FG091100085
CP000496
Ascomycota
Pichia stipitis CBS 6054
844232
844160
-
Gly
GCC
[ENA]
¡û
>FG091100090
CP000497
Ascomycota
Pichia stipitis CBS 6054
1390689
1390759
+
Gly
GCC
[ENA]
¡û
>FG091100092
CP000497
Ascomycota
Pichia stipitis CBS 6054
1688970
1689042
+
Gly
GCC
[ENA]
¡û
>FG091100180
CR382135
Ascomycota
Debaryomyces hansenii CBS767
1504493
1504563
+
Gly
GCC
[ENA]
¡û
>FG091100187
CR382135
Ascomycota
Debaryomyces hansenii CBS767
595929
595859
-
Gly
GCC
[ENA]
¡û
>FG091100191
CR382136
Ascomycota
Debaryomyces hansenii CBS767
888692
888762
+
Gly
GCC
[ENA]
¡û
>FG091100193
CR382136
Ascomycota
Debaryomyces hansenii CBS767
1525957
1526027
+
Gly
GCC
[ENA]
¡û
Identical group No.794847 (30 seq.)
>FG090100687
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
636203
636273
+
Gly
GCC
[ENA]
¡û
>FG090100694
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1745449
1745519
+
Gly
GCC
[ENA]
¡û
>FG090100701
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2475748
2475678
-
Gly
GCC
[ENA]
¡û
>FG090100710
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
251371
251441
+
Gly
GCC
[ENA]
¡û
>FG090100713
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
417851
417921
+
Gly
GCC
[ENA]
¡û
>FG090100715
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
624935
625005
+
Gly
GCC
[ENA]
¡û
>FG090100716
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
963247
963317
+
Gly
GCC
[ENA]
¡û
>FG090100717
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1238222
1238292
+
Gly
GCC
[ENA]
¡û
>FG090100718
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1543852
1543922
+
Gly
GCC
[ENA]
¡û
>FG090100720
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1705001
1705073
+
Gly
GCC
[ENA]
¡û
>FG090100725
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2463226
2463296
+
Gly
GCC
[ENA]
¡û
>FG090100730
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
3062809
3062739
-
Gly
GCC
[ENA]
¡û
>FG090100733
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1981541
1981471
-
Gly
GCC
[ENA]
¡û
>FG090100736
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1448185
1448115
-
Gly
GCC
[ENA]
¡û
>FG090100737
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1286740
1286670
-
Gly
GCC
[ENA]
¡û
>FG090100767
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2367494
2367564
+
Gly
GCC
[ENA]
¡û
>FG090100773
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3569382
3569452
+
Gly
GCC
[ENA]
¡û
>FG090100775
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3238510
3238438
-
Gly
GCC
[ENA]
¡û
>FG090100785
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
843491
843421
-
Gly
GCC
[ENA]
¡û
>FG091100117
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
484054
484124
+
Gly
GCC
[ENA]
¡û
>FG091100123
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1318253
1318323
+
Gly
GCC
[ENA]
¡û
>FG091100124
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1334940
1335010
+
Gly
GCC
[ENA]
¡û
>FG091100142
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
880004
879934
-
Gly
GCC
[ENA]
¡û
>FG091100143
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
712283
712213
-
Gly
GCC
[ENA]
¡û
>FG091100144
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
615070
615000
-
Gly
GCC
[ENA]
¡û
>FG091100148
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
456973
456901
-
Gly
GCC
[ENA]
¡û
>FG091100153
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3429923
3429993
+
Gly
GCC
[ENA]
¡û
>FG091100156
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3414009
3413937
-
Gly
GCC
[ENA]
¡û
>FG091100160
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2405498
2405428
-
Gly
GCC
[ENA]
¡û
>FG091100165
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
803122
803052
-
Gly
GCC
[ENA]
¡û
Identical group No.799869 (8 seq.)
>FG090100608
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
570156
570226
+
Gly
GCC
[ENA]
¡û
>FG090100637
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1644745
1644675
-
Gly
GCC
[ENA]
¡û
>FG090100641
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1599407
1599337
-
Gly
GCC
[ENA]
¡û
>FG090100649
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
181064
180994
-
Gly
GCC
[ENA]
¡û
>FG090100681
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
820637
820567
-
Gly
GCC
[ENA]
¡û
>FG090100684
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
113786
113716
-
Gly
GCC
[ENA]
¡û
>FG092110030
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
2249250
2249180
-
Gly
GCC
[ENA]
¡û
>FG092110032
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1646362
1646292
-
Gly
GCC
[ENA]
¡û
Identical group No.802004 (47 seq.)
>WENV182597851
OJJC01002010
[OJJC] metagenome; faeces
393
323
-
Gly
GCC
[ENA]
¢þ
>WENV182629528
OJKS01030578
[OJKS] metagenome; surface
140
210
+
Gly
GCC
[ENA]
¢þ
>WENV170659112
JXWR01000135
[JXWR] soil metagenome; rice field; ambient CO2
10769
10699
-
Gly
GCC
[ENA]
¢þ
>WENV170659182
JXWR01001323
[JXWR] soil metagenome; rice field; ambient CO2
5662
5732
+
Gly
GCC
[ENA]
¢þ
>WENV170659411
JXWR01005256
[JXWR] soil metagenome; rice field; ambient CO2
3318
3248
-
Gly
GCC
[ENA]
¢þ
>WENV170659466
JXWR01006084
[JXWR] soil metagenome; rice field; ambient CO2
222
292
+
Gly
GCC
[ENA]
¢þ
>WENV170659517
JXWR01007890
[JXWR] soil metagenome; rice field; ambient CO2
1432
1502
+
Gly
GCC
[ENA]
¢þ
>WENV170659519
JXWR01007892
[JXWR] soil metagenome; rice field; ambient CO2
2378
2448
+
Gly
GCC
[ENA]
¢þ
>WENV170659579
JXWR01010644
[JXWR] soil metagenome; rice field; ambient CO2
111
41
-
Gly
GCC
[ENA]
¢þ
>WENV170659624
JXWR01015662
[JXWR] soil metagenome; rice field; ambient CO2
5954
5884
-
Gly
GCC
[ENA]
¢þ
>WENV170659653
JXWR01020053
[JXWR] soil metagenome; rice field; ambient CO2
2677
2607
-
Gly
GCC
[ENA]
¢þ
>WENV170659734
JXWR01061007
[JXWR] soil metagenome; rice field; ambient CO2
92
162
+
Gly
GCC
[ENA]
¢þ
>WENV170668486
LAFL01001478
[LAFL] hot springs metagenome; hot springs water enriched for viruses sample NL10_1002_vDNA_WGA
363
433
+
Gly
GCC
[ENA]
¢þ
>W1910872240
NDFM01000389
Actinomycetota
Rothia sp. Olga [NDFM]
113
43
-
Gly
GCC
[ENA]
¡û
>W1810672934
QJTT01000425
Gammaproteobacteria
Pseudomonas savastanoi pv. glycinea 2411 [QJTT]
372
445
+
Gly
GCC
[ENA]
¡û
>W1810673231
QJTY01000507
Gammaproteobacteria
Pseudomonas syringae pv. pisi 203 [QJTY]
167
94
-
Gly
GCC
[ENA]
¡û
>W1810673360
QJTZ01000794
Gammaproteobacteria
Pseudomonas syringae pv. pisi 1452A [QJTZ]
295
368
+
Gly
GCC
[ENA]
¡û
>FG090100077
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
206600
206530
-
Gly
GCC
[ENA]
¡û
>FG090100090
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
349921
349991
+
Gly
GCC
[ENA]
¡û
>FG090100095
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
516034
516104
+
Gly
GCC
[ENA]
¡û
>FG090100096
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
569043
569113
+
Gly
GCC
[ENA]
¡û
>FG090100144
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
366330
366400
+
Gly
GCC
[ENA]
¡û
>FG090100184
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
1020559
1020629
+
Gly
GCC
[ENA]
¡û
>FG090100187
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
1039535
1039465
-
Gly
GCC
[ENA]
¡û
>FG090100201
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1011594
1011665
+
Gly
GCC
[ENA]
¡û
>FG090100206
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1030535
1030465
-
Gly
GCC
[ENA]
¡û
>FG090100209
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1022580
1022510
-
Gly
GCC
[ENA]
¡û
>FG090100214
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
134605
134535
-
Gly
GCC
[ENA]
¡û
>FG090100223
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
794903
794833
-
Gly
GCC
[ENA]
¡û
>SC0100014
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
197702
197632
-
Gly
GCC
[ENA]
¡û
>SC0100020
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
142769
142699
-
Gly
GCC
[ENA]
¡û
>SC0100023
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
83549
83619
+
Gly
GCC
[ENA]
¡û
>SC0100030
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
992828
992899
+
Gly
GCC
[ENA]
¡û
>SC0100064
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
61960
61890
-
Gly
GCC
[ENA]
¡û
>SC0100065
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
162222
162292
+
Gly
GCC
[ENA]
¡û
>SC0100067
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
181036
180966
-
Gly
GCC
[ENA]
¡û
>SC0100083
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
845654
845724
+
Gly
GCC
[ENA]
¡û
>SC0100086
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
931026
930956
-
Gly
GCC
[ENA]
¡û
>SC0100120
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
531821
531891
+
Gly
GCC
[ENA]
¡û
>SC0100126
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
396791
396721
-
Gly
GCC
[ENA]
¡û
>SC0100173
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
183968
183898
-
Gly
GCC
[ENA]
¡û
>SC0100186
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
282165
282235
+
Gly
GCC
[ENA]
¡û
>SC0100196
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
226680
226610
-
Gly
GCC
[ENA]
¡û
>SC0100198
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
572266
572336
+
Gly
GCC
[ENA]
¡û
>SC0100205
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
860375
860445
+
Gly
GCC
[ENA]
¡û
>W1610158754
FAMN01002544
Bacillota
Clostridioides difficile [FAMN]
123
53
-
Gly
GCC
[ENA]
¡û
>W1710160421
FAMN01002544
Bacillota
Clostridioides difficile [FAMN]
123
53
-
Gly
GCC
[ENA]
¡û
Identical group No.803298 (1 seq.)
>FG090100373
AL590446
Microsporidia
Encephalitozoon_cuniculi_GB-M1
54370
54300
-
Gly
GCC
[ENA]
¡û
Identical group No.806957 (11 seq.)
>FG090100001
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
99806
99876
+
Gly
GCC
[ENA]
¡û
>FG090100003
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
305389
305460
+
Gly
GCC
[ENA]
¡û
>FG090100004
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
347752
347822
+
Gly
GCC
[ENA]
¡û
>FG090100005
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
347935
348005
+
Gly
GCC
[ENA]
¡û
>FG090100021
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
97118
97188
+
Gly
GCC
[ENA]
¡û
>FG090100038
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
80102
80172
+
Gly
GCC
[ENA]
¡û
>FG090100043
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
572004
572074
+
Gly
GCC
[ENA]
¡û
>FG090100063
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
91471
91400
-
Gly
GCC
[ENA]
¡û
>FG090100067
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
309039
308969
-
Gly
GCC
[ENA]
¡û
>FG091100016
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
657567
657497
-
Gly
GCC
[ENA]
¡û
>FG091100044
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1293020
1293090
+
Gly
GCC
[ENA]
¡û
Identical group No.821281 (7 seq.)
>FG090100397
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
338524
338594
+
Gly
GCC
[ENA]
¡û
>FG090100409
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
944501
944431
-
Gly
GCC
[ENA]
¡û
>FG090100450
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1325213
1325283
+
Gly
GCC
[ENA]
¡û
>FG090100451
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1329593
1329663
+
Gly
GCC
[ENA]
¡û
>FG090100475
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1494645
1494575
-
Gly
GCC
[ENA]
¡û
>FG090100488
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2142776
2142846
+
Gly
GCC
[ENA]
¡û
>FG090100502
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1407887
1407817
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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