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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TGC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462479 (17 seq.)
>WENV181967882
OGZV01041160
[OGZV] human gut metagenome; faeces
44
118
+
Ala
TGC
[ENA]
¢þ
>WENV183751174
PPYE01004448
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2481
2407
-
Ala
TGC
[ENA]
¢þ
>WENV170659300
JXWR01003220
[JXWR] soil metagenome; rice field; ambient CO2
13135
13063
-
Ala
TGC
[ENA]
¢þ
>WENV170659318
JXWR01003282
[JXWR] soil metagenome; rice field; ambient CO2
6381
6309
-
Ala
TGC
[ENA]
¢þ
>WENV170659321
JXWR01003349
[JXWR] soil metagenome; rice field; ambient CO2
2973
2899
-
Ala
TGC
[ENA]
¢þ
>WENV170659438
JXWR01005466
[JXWR] soil metagenome; rice field; ambient CO2
1449
1523
+
Ala
TGC
[ENA]
¢þ
>WENV170659516
JXWR01007885
[JXWR] soil metagenome; rice field; ambient CO2
124
196
+
Ala
TGC
[ENA]
¢þ
>FG090100075
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
360214
360140
-
Ala
TGC
[ENA]
¡û
>FG090100098
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
578042
578116
+
Ala
TGC
[ENA]
¡û
>FG090100106
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
288968
289040
+
Ala
TGC
[ENA]
¡û
>FG090100120
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
70779
70853
+
Ala
TGC
[ENA]
¡û
>FG090100229
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
514663
514588
-
Ala
TGC
[ENA]
¡û
>SC0100001
NC_001133
Ascomycota
Saccharomyces cerevisiae S288c
166267
166341
+
Ala
TGC
[ENA]
¡û
>SC0100060
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
312092
312018
-
Ala
TGC
[ENA]
¡û
>SC0100081
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
794422
794494
+
Ala
TGC
[ENA]
¡û
>SC0100158
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
214956
214884
-
Ala
TGC
[ENA]
¡û
>SC0100191
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
854258
854186
-
Ala
TGC
[ENA]
¡û
Identical group No.528427 (9 seq.)
>WENV170659122
JXWR01000209
[JXWR] soil metagenome; rice field; ambient CO2
20545
20471
-
Ala
TGC
[ENA]
¢þ
>WENV170659134
JXWR01000437
[JXWR] soil metagenome; rice field; ambient CO2
8487
8413
-
Ala
TGC
[ENA]
¢þ
>WENV170659248
JXWR01002495
[JXWR] soil metagenome; rice field; ambient CO2
6833
6759
-
Ala
TGC
[ENA]
¢þ
>WENV170659281
JXWR01002617
[JXWR] soil metagenome; rice field; ambient CO2
9093
9019
-
Ala
TGC
[ENA]
¢þ
>WENV170659412
JXWR01005294
[JXWR] soil metagenome; rice field; ambient CO2
11672
11746
+
Ala
TGC
[ENA]
¢þ
>FG090100280
CR382137
Ascomycota
Debaryomyces hansenii CBS767
812945
813017
+
Ala
TGC
[ENA]
¡û
>FG090100316
CR382138
Ascomycota
Debaryomyces hansenii CBS767
877778
877850
+
Ala
TGC
[ENA]
¡û
>FG090100317
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1042919
1042991
+
Ala
TGC
[ENA]
¡û
>FG091100184
CR382135
Ascomycota
Debaryomyces hansenii CBS767
646932
646859
-
Ala
TGC
[ENA]
¡û
Identical group No.541145 (3 seq.)
>FG090100404
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
785914
785988
+
Ala
TGC
[ENA]
¡û
>FG090100428
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
749079
749005
-
Ala
TGC
[ENA]
¡û
>FG090100486
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1583941
1584014
+
Ala
TGC
[ENA]
¡û
Identical group No.564726 (1 seq.)
>FG091100068
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
549907
549835
-
Ala
TGC
[ENA]
¡û
Identical group No.575240 (3 seq.)
>FG090100534
CM000437
Ascomycota
Pichia stipitis CBS 6054
354005
353931
-
Ala
TGC
[ENA]
¡û
>FG090100576
CP000499
Ascomycota
Pichia stipitis CBS 6054
399920
399846
-
Ala
TGC
[ENA]
¡û
>FG091100093
CP000497
Ascomycota
Pichia stipitis CBS 6054
1701508
1701436
-
Ala
TGC
[ENA]
¡û
Identical group No.597169 (2 seq.)
>FG091200005
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1832935
1832844
-
Ala
TGC
[ENA]
¡û
>FG091900193
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1832935
1832844
-
Ala
TGC
[ENA]
¡û
Identical group No.604501 (1 seq.)
>FG090100025
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
292624
292550
-
Ala
TGC
[ENA]
¡û
Identical group No.629597 (2 seq.)
>FG091100047
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1439179
1439251
+
Ala
TGC
[ENA]
¡û
>FG091100053
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
849813
849741
-
Ala
TGC
[ENA]
¡û
Identical group No.714653 (2 seq.)
>FG092110010
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3157429
3157502
+
Ala
TGC
[ENA]
¡û
>FG092110035
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1195664
1195591
-
Ala
TGC
[ENA]
¡û
Identical group No.721382 (4 seq.)
>FG090300027
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
210494
210567
+
Ala
TGC
[ENA]
¡û
>FG090300031
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1659353
1659281
-
Ala
TGC
[ENA]
¡û
>FG091300006
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1577034
1576962
-
Ala
TGC
[ENA]
¡û
>FG091300013
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3118992
3118920
-
Ala
TGC
[ENA]
¡û
Identical group No.816406 (1 seq.)
>FG090100358
AL590442
Microsporidia
Encephalitozoon_cuniculi_GB-M1
117723
117653
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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