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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TGG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.586973 (3 seq.)
>FG090300015
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
357152
357225
+
Pro
TGG
[ENA]
¡û
>FG090300017
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2849805
2849877
+
Pro
TGG
[ENA]
¡û
>FG091300004
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1054510
1054582
+
Pro
TGG
[ENA]
¡û
Identical group No.629600 (1 seq.)
>FG091900180
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
643480
643368
-
Pro
TGG
[ENA]
¡û
Identical group No.659362 (1 seq.)
>FG090100365
AL590444
Microsporidia
Encephalitozoon_cuniculi_GB-M1
182891
182962
+
Pro
TGG
[ENA]
¡û
Identical group No.659364 (37 seq.)
>W1910871764
NCXI01000458
Bacillota
Lentilactobacillus parakefiri OG2 [NCXI]
153
224
+
Pro
TGG
[ENA]
¡û
>FU090900019
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
71735
71627
-
Pro
TGG
[ENA]
¡û
>FU090900030
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
139239
139131
-
Pro
TGG
[ENA]
¡û
>FU090900031
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
62853
62961
+
Pro
TGG
[ENA]
¡û
>FU090900036
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
365510
365402
-
Pro
TGG
[ENA]
¡û
>FU090900041
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
270965
271073
+
Pro
TGG
[ENA]
¡û
>FU090900042
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
144977
144869
-
Pro
TGG
[ENA]
¡û
>FU090900045
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
580256
580364
+
Pro
TGG
[ENA]
¡û
>FU090900106
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1681940
1682047
+
Pro
TGG
[ENA]
¡û
>FU090900109
CR382137
Ascomycota
Debaryomyces hansenii CBS767
694844
694737
-
Pro
TGG
[ENA]
¡û
>FU090900110
CR382137
Ascomycota
Debaryomyces hansenii CBS767
612387
612280
-
Pro
TGG
[ENA]
¡û
>FU090900114
CR382138
Ascomycota
Debaryomyces hansenii CBS767
627450
627557
+
Pro
TGG
[ENA]
¡û
>FU090900124
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1807758
1807865
+
Pro
TGG
[ENA]
¡û
>FU090900129
CR382139
Ascomycota
Debaryomyces hansenii CBS767
794430
794323
-
Pro
TGG
[ENA]
¡û
>FU090900137
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
154028
154149
+
Pro
TGG
[ENA]
¡û
>FU090900143
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1236995
1236874
-
Pro
TGG
[ENA]
¡û
>FU090900144
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
697169
697048
-
Pro
TGG
[ENA]
¡û
>FU090900150
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2021805
2021684
-
Pro
TGG
[ENA]
¡û
>FU090900157
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2002117
2002238
+
Pro
TGG
[ENA]
¡û
>FU090900162
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
875041
874920
-
Pro
TGG
[ENA]
¡û
>FU090900163
CM000437
Ascomycota
Pichia stipitis CBS 6054
440175
440283
+
Pro
TGG
[ENA]
¡û
>FU090900167
CM000437
Ascomycota
Pichia stipitis CBS 6054
1133013
1132905
-
Pro
TGG
[ENA]
¡û
>FU090900169
CM000437
Ascomycota
Pichia stipitis CBS 6054
234780
234672
-
Pro
TGG
[ENA]
¡û
>FU090900178
CP000500
Ascomycota
Pichia stipitis CBS 6054
1229888
1229996
+
Pro
TGG
[ENA]
¡û
>FU090900179
CP000500
Ascomycota
Pichia stipitis CBS 6054
1337922
1338030
+
Pro
TGG
[ENA]
¡û
>FU090900181
CP000500
Ascomycota
Pichia stipitis CBS 6054
395461
395353
-
Pro
TGG
[ENA]
¡û
>SC0900047
NC_001133
Ascomycota
Saccharomyces cerevisiae S288c
139154
139256
+
Pro
TGG
[ENA]
¡û
>SC0900055
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
101370
101472
+
Pro
TGG
[ENA]
¡û
>SC0900063
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
388998
388896
-
Pro
TGG
[ENA]
¡û
>SC0900069
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
92547
92649
+
Pro
TGG
[ENA]
¡û
>SC0900076
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
196170
196068
-
Pro
TGG
[ENA]
¡û
>SC0900078
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
547095
547197
+
Pro
TGG
[ENA]
¡û
>SC0900079
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
568116
568218
+
Pro
TGG
[ENA]
¡û
>SC0900081
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
301098
301199
+
Pro
TGG
[ENA]
¡û
>SC0900082
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
464452
464553
+
Pro
TGG
[ENA]
¡û
>FG091900227
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
518069
517949
-
Pro
TGG
[ENA]
¡û
>FG091900321
CR382136
Ascomycota
Debaryomyces hansenii CBS767
702780
702673
-
Pro
TGG
[ENA]
¡û
Identical group No.659366 (1 seq.)
>FU090900059
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1279571
1279485
-
Pro
TGG
[ENA]
¡û
Identical group No.675947 (6 seq.)
>FU090900015
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
430732
430621
-
Pro
TGG
[ENA]
¡û
>FU090900018
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
28645
28533
-
Pro
TGG
[ENA]
¡û
>FG091900170
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
750716
750605
-
Pro
TGG
[ENA]
¡û
>FG091900171
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
475899
476010
+
Pro
TGG
[ENA]
¡û
>FG091900174
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
795628
795739
+
Pro
TGG
[ENA]
¡û
>FG091900187
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
1187217
1187106
-
Pro
TGG
[ENA]
¡û
Identical group No.698772 (1 seq.)
>FG090100628
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
3360590
3360519
-
Pro
TGG
[ENA]
¡û
Identical group No.714651 (2 seq.)
>FG090100603
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
365155
365226
+
Pro
TGG
[ENA]
¡û
>FG092110001
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
365155
365226
+
Pro
TGG
[ENA]
¡û
Identical group No.735088 (1 seq.)
>SC0900083
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
980680
980784
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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