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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30945 (1 seq.)
>PHG0100411
DQ115870
Myoviridae
Cyanobacteria phage AS-1 TP901-1C (DQ115870)
511
601
+
Ser
CGA
[ENA]
¡û
Identical group No.95565 (7 seq.)
>PHG181004068
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
50210
50297
+
Ser
CGA
[ENA]
¡û
>PHG181004089
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
50685
50772
+
Ser
CGA
[ENA]
¡û
>PHG181004135
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
55218
55305
+
Ser
CGA
[ENA]
¡û
>PHG181004156
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
50802
50889
+
Ser
CGA
[ENA]
¡û
>PHG181004179
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
51242
51329
+
Ser
CGA
[ENA]
¡û
>PHG14101743
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
50758
50845
+
Ser
CGA
[ENA]
¡û
>PHG14101818
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
157055
156968
-
Ser
CGA
[ENA]
¡û
Identical group No.97203 (1 seq.)
>PHG14101723
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
49475
49562
+
Ser
CGA
[ENA]
¡û
Identical group No.105740 (2 seq.)
>PHG14101660
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
49440
49527
+
Ser
CGA
[ENA]
¡û
>PHG14101702
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
50288
50375
+
Ser
CGA
[ENA]
¡û
Identical group No.112133 (1 seq.)
>PHG181004111
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
50081
50168
+
Ser
CGA
[ENA]
¡û
Identical group No.157070 (5 seq.)
>PHG181001959
KU160638
Siphoviridae
Arthrobacter phage Amigo (KU160638)
39833
39750
-
Ser
CGA
[ENA]
¡û
>PHG181001963
KU160639
Siphoviridae
Arthrobacter phage Anansi (KU160639)
39440
39357
-
Ser
CGA
[ENA]
¡û
>PHG181001967
KU160647
Siphoviridae
Arthrobacter phage Gorgeous (KU160647)
39440
39357
-
Ser
CGA
[ENA]
¡û
>PHG181001971
KU160663
Siphoviridae
Arthrobacter phage Rings (KU160663)
39881
39798
-
Ser
CGA
[ENA]
¡û
>PHG181001975
KU160666
Siphoviridae
Arthrobacter phage SorJuana (KU160666)
39440
39357
-
Ser
CGA
[ENA]
¡û
Identical group No.189796 (2 seq.)
>PHG181005151
MF197383
Siphoviridae
Corynebacterium phage Poushou (MF197383)
5989
6071
+
Ser
CGA
[ENA]
¡û
>PHG181007945
MH271317
Siphoviridae
Corynebacterium phage TouchMeNot (MH271317)
5989
6071
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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