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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGT
HIT:
37 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251086 (2 seq.)
>PHG0100074
AJ006589
Siphoviridae
Streptomyces virus phiC31 Norwich stock (AJ006589)
40702
40777
+
Thr
CGT
[ENA]
¡û
>PHG0100648
X91149
Siphoviridae
Streptomyces virus phiC31 Norwich stock (X91149)
311
386
+
Thr
CGT
[ENA]
¡û
Identical group No.300060 (5 seq.)
>PHG181005112
MF185726
Siphoviridae
Mycobacterium phage Appletree2 (MF185726)
60849
60923
+
Thr
CGT
[ENA]
¡û
>PHG14100513
HM152763
Siphoviridae
Mycobacterium virus Bron AO7543 (HM152763)
60938
61012
+
Thr
CGT
[ENA]
¡û
>PHG14100908
JF704108
Siphoviridae
Mycobacterium virus Joedirt Phipps (JF704108)
61883
61957
+
Thr
CGT
[ENA]
¡û
>PHG14100918
JF704113
Siphoviridae
Mycobacterium phage UPIE Oosterbaan (JF704113)
61281
61355
+
Thr
CGT
[ENA]
¡û
>PHG14101178
JN600672
Siphoviridae
Mycobacterium phage Fezzik vB_EcoM_CBA120 (JN600672)
61770
61844
+
Thr
CGT
[ENA]
¡û
Identical group No.348968 (1 seq.)
>PHG14101883
JX182372
Siphoviridae
Streptomyces virus TG1 (JX182372)
39556
39630
+
Thr
CGT
[ENA]
¡û
Identical group No.422493 (1 seq.)
>PHG14102118
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
49029
48954
-
Thr
CGT
[ENA]
¡û
Identical group No.460854 (6 seq.)
>PHG0100451
DQ398053
Myoviridae
Mycobacterium phage Catera Brazil-1 (DQ398053)
93083
93156
+
Thr
CGT
[ENA]
¡û
>PHG0100537
EU826467
Myoviridae
Mycobacterium phage Rizal N4 (EU826467)
92827
92900
+
Thr
CGT
[ENA]
¡û
>PHG181003557
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
99234
99307
+
Thr
CGT
[ENA]
¡û
>PHG181006225
MF919495
Myoviridae
Mycobacterium phage Bigswole (MF919495)
97069
97142
+
Thr
CGT
[ENA]
¡û
>PHG14100207
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
93945
94018
+
Thr
CGT
[ENA]
¡û
>PHG14101288
JN699626
Myoviridae
Mycobacterium phage MoMoMixon (JN699626)
94303
94376
+
Thr
CGT
[ENA]
¡û
Identical group No.480735 (37 seq.)
>PHG0100219
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
97205
97279
+
Thr
CGT
[ENA]
¡û
>PHG0100557
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
94964
95038
+
Thr
CGT
[ENA]
¡û
>PHG0100577
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
93848
93922
+
Thr
CGT
[ENA]
¡û
>PHG0100598
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
95461
95535
+
Thr
CGT
[ENA]
¡û
>PHG181001232
KR080196
Myoviridae
Mycobacterium phage Momo (KR080196)
93750
93824
+
Thr
CGT
[ENA]
¡û
>PHG181001475
KT281790
Myoviridae
Mycobacterium phage HyRo (KT281790)
94079
94153
+
Thr
CGT
[ENA]
¡û
>PHG181001545
KT321476
Myoviridae
Mycobacterium phage Zeenon (KT321476)
94796
94870
+
Thr
CGT
[ENA]
¡û
>PHG181001624
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
96274
96348
+
Thr
CGT
[ENA]
¡û
>PHG181001645
KT365400
Myoviridae
Mycobacterium phage ErnieJ (KT365400)
93476
93550
+
Thr
CGT
[ENA]
¡û
>PHG181003192
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
94910
94984
+
Thr
CGT
[ENA]
¡û
>PHG181003507
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
94710
94784
+
Thr
CGT
[ENA]
¡û
>PHG181003595
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
93767
93841
+
Thr
CGT
[ENA]
¡û
>PHG181003633
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
95566
95640
+
Thr
CGT
[ENA]
¡û
>PHG181006178
MF919493
Myoviridae
Mycobacterium phage Audrick (MF919493)
94432
94506
+
Thr
CGT
[ENA]
¡û
>PHG181006201
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
94142
94216
+
Thr
CGT
[ENA]
¡û
>PHG181006247
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
94849
94923
+
Thr
CGT
[ENA]
¡û
>PHG181006273
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
92700
92774
+
Thr
CGT
[ENA]
¡û
>PHG181006304
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
95762
95836
+
Thr
CGT
[ENA]
¡û
>PHG181007353
MG812494
Myoviridae
Mycobacterium phage Pier (MG812494)
97014
97088
+
Thr
CGT
[ENA]
¡û
>PHG181007662
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
95964
96038
+
Thr
CGT
[ENA]
¡û
>PHG181007684
MH051266
Myoviridae
Mycobacterium phage MikeLiesIn (MH051266)
95732
95806
+
Thr
CGT
[ENA]
¡û
>PHG181007963
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
95150
95224
+
Thr
CGT
[ENA]
¡û
>PHG181007989
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
94846
94920
+
Thr
CGT
[ENA]
¡û
>PHG14100229
GQ303262
Myoviridae
Mycobacterium phage LRRHood ATCC 35860-B1 (GQ303262)
94556
94630
+
Thr
CGT
[ENA]
¡û
>PHG14100891
JF704096
Myoviridae
Mycobacterium phage Ghost MB56Spyo045 (JF704096)
94453
94527
+
Thr
CGT
[ENA]
¡û
>PHG14100939
JF704116
Myoviridae
Mycobacterium phage Drazdys (JF704116)
94817
94891
+
Thr
CGT
[ENA]
¡û
>PHG14101167
JN412592
Myoviridae
Mycobacterium phage LinStu Patience (JN412592)
94804
94878
+
Thr
CGT
[ENA]
¡û
>PHG14101197
JN624850
Myoviridae
Mycobacterium phage Pleione (JN624850)
94977
95051
+
Thr
CGT
[ENA]
¡û
>PHG14101245
JN699013
Myoviridae
Mycobacterium phage Pio ThreeOh3D2 (JN699013)
97861
97935
+
Thr
CGT
[ENA]
¡û
>PHG14101310
JN699627
Myoviridae
Mycobacterium phage Nappy (JN699627)
95867
95940
+
Thr
CGT
[ENA]
¡û
>PHG14101604
JQ911768
Myoviridae
Mycobacterium phage Ava3 Lu11 (JQ911768)
94281
94355
+
Thr
CGT
[ENA]
¡û
>PHG14102219
KC691257
Myoviridae
Mycobacterium phage Astraea Gb1 (KC691257)
93841
93915
+
Thr
CGT
[ENA]
¡û
>PHG14102264
KC748970
Myoviridae
Mycobacterium phage ArcherS7 Gb1 (KC748970)
94780
94854
+
Thr
CGT
[ENA]
¡û
>PHG14102448
KF006817
Myoviridae
Mycobacterium phage Breeniome phi47:1 (KF006817)
93793
93867
+
Thr
CGT
[ENA]
¡û
>PHG14102489
KF024734
Myoviridae
Mycobacterium phage Shrimp phi47:1 (KF024734)
95514
95588
+
Thr
CGT
[ENA]
¡û
>PHG14102994
KJ595575
Myoviridae
Mycobacterium phage Willis LMSP-25 (KJ595575)
94745
94819
+
Thr
CGT
[ENA]
¡û
>PHG14103356
KM881426
Myoviridae
Mycobacterium phage ZygoTaiga pEcSw (KM881426)
95765
95839
+
Thr
CGT
[ENA]
¡û
Identical group No.483811 (2 seq.)
>PHG181001977
KU234099
Siphoviridae
Mycobacterium phage MkaliMitinis3 (KU234099)
63152
63225
+
Thr
CGT
[ENA]
¡û
>PHG14102467
KF024731
Siphoviridae
Mycobacterium phage Crossroads phi47:1 (KF024731)
63172
63245
+
Thr
CGT
[ENA]
¡û
Identical group No.483814 (1 seq.)
>PHG14102240
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
96443
96517
+
Thr
CGT
[ENA]
¡û
Identical group No.504485 (2 seq.)
>PHG181001783
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
20632
20707
+
Thr
CGT
[ENA]
¡û
>PHG181007585
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
20674
20749
+
Thr
CGT
[ENA]
¡û
Identical group No.523546 (1 seq.)
>PHG181008293
MH399779
Siphoviridae
Microbacterium phage Jacko (MH399779)
7717
7790
+
Thr
CGT
[ENA]
¡û
Identical group No.562761 (4 seq.)
>PHG181003533
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
95518
95592
+
Thr
CGT
[ENA]
¡û
>PHG181007331
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
97472
97546
+
Thr
CGT
[ENA]
¡û
>PHG14101075
JN204348
Myoviridae
Mycobacterium phage Sebata (JN204348)
95981
96055
+
Thr
CGT
[ENA]
¡û
>PHG14101267
JN699625
Myoviridae
Mycobacterium phage Wally ThreeOh3D2 (JN699625)
93966
94040
+
Thr
CGT
[ENA]
¡û
Identical group No.562764 (5 seq.)
>PHG181003429
KX580961
Siphoviridae
Mycobacterium phage Zakai (KX580961)
63048
63121
+
Thr
CGT
[ENA]
¡û
>PHG181005130
MF185730
Siphoviridae
Mycobacterium phage Miley16 (MF185730)
63338
63411
+
Thr
CGT
[ENA]
¡û
>PHG14100947
JF744988
Siphoviridae
Mycobacterium virus Faith1 (JF744988)
62646
62719
+
Thr
CGT
[ENA]
¡û
>PHG14102174
KC661276
Siphoviridae
Mycobacterium phage Winky Gb1 (KC661276)
63338
63411
+
Thr
CGT
[ENA]
¡û
>PHG14102194
KC691254
Siphoviridae
Mycobacterium phage Breezona Gb1 (KC691254)
63338
63411
+
Thr
CGT
[ENA]
¡û
Identical group No.572077 (4 seq.)
>PHG181002442
KU997639
Siphoviridae
Mycobacterium phage Loadrie (KU997639)
63222
63295
+
Thr
CGT
[ENA]
¡û
>PHG181003378
KX507361
Siphoviridae
Mycobacterium phage Gardann (KX507361)
62844
62917
+
Thr
CGT
[ENA]
¡û
>PHG181004960
MF140422
Siphoviridae
Mycobacterium phage Nicholasp3 (MF140422)
62844
62917
+
Thr
CGT
[ENA]
¡û
>PHG181005118
MF185728
Siphoviridae
Mycobacterium phage Finemlucis (MF185728)
63805
63878
+
Thr
CGT
[ENA]
¡û
Identical group No.572806 (5 seq.)
>PHG181008509
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
16557
16484
-
Thr
CGT
[ENA]
¡û
>PHG181008544
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
16238
16165
-
Thr
CGT
[ENA]
¡û
>PHG181008658
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
16318
16245
-
Thr
CGT
[ENA]
¡û
>PHG181008694
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
16687
16614
-
Thr
CGT
[ENA]
¡û
>W1810079352
PEKU01000042
Actinomycetota
Streptomyces sp. JV178 [PEKU]
7098
7025
-
Thr
CGT
[ENA]
¡û
Identical group No.585154 (1 seq.)
>PHG14101147
JN412588
Myoviridae
Mycobacterium phage Dandelion (JN412588)
98280
98353
+
Thr
CGT
[ENA]
¡û
Identical group No.586873 (2 seq.)
>PHG0100140
AJ697969
Myoviridae
Pseudomonas phage EL phiFZB24 (AJ697969)
102946
103021
+
Thr
CGT
[ENA]
¡û
>W1510654887
CVWD01000171
Gammaproteobacteria
Pseudomonas aeruginosa E6_London_17_VIM_2_12_12 [CVWD]
494
569
+
Thr
CGT
[ENA]
¡û
Identical group No.627259 (1 seq.)
>PHG181007639
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
96788
96861
+
Thr
CGT
[ENA]
¡û
Identical group No.639011 (1 seq.)
>PHG181008466
MH576962
Siphoviridae
Streptomyces phage Satis (MH576962)
125076
125149
+
Thr
CGT
[ENA]
¡û
Identical group No.652647 (1 seq.)
>PHG181008580
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
16927
16854
-
Thr
CGT
[ENA]
¡û
Identical group No.684226 (5 seq.)
>PHG181001495
KT281794
Siphoviridae
Mycobacterium phage Snenia (KT281794)
62793
62865
+
Thr
CGT
[ENA]
¡û
>PHG181001657
KT372003
Siphoviridae
Mycobacterium phage Lumos (KT372003)
62789
62861
+
Thr
CGT
[ENA]
¡û
>PHG181004926
MF140405
Siphoviridae
Mycobacterium phage Clautastrophe (MF140405)
62792
62864
+
Thr
CGT
[ENA]
¡û
>PHG181004936
MF140413
Siphoviridae
Mycobacterium phage Kingsolomon (MF140413)
62901
62973
+
Thr
CGT
[ENA]
¡û
>PHG181004954
MF140421
Siphoviridae
Mycobacterium phage Nicholas (MF140421)
62901
62973
+
Thr
CGT
[ENA]
¡û
Identical group No.684256 (1 seq.)
>PHG181005408
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
16585
16513
-
Thr
CGT
[ENA]
¡û
Identical group No.684257 (2 seq.)
>PHG181005443
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
17355
17283
-
Thr
CGT
[ENA]
¡û
>PHG181005526
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
16981
16909
-
Thr
CGT
[ENA]
¡û
Identical group No.695893 (1 seq.)
>PHG181006939
MG593803
Siphoviridae
Streptomyces phage Rowa (MG593803)
41934
42006
+
Thr
CGT
[ENA]
¡û
Identical group No.711670 (3 seq.)
>PHG181001485
KT281791
Siphoviridae
Mycobacterium phage Lolly9 (KT281791)
62858
62930
+
Thr
CGT
[ENA]
¡û
>PHG181004943
MF140414
Siphoviridae
Mycobacterium phage Krypton555 (MF140414)
63180
63252
+
Thr
CGT
[ENA]
¡û
>PHG14102458
KF024725
Siphoviridae
Mycobacterium phage Whirlwind phi47:1 (KF024725)
63038
63110
+
Thr
CGT
[ENA]
¡û
Identical group No.719290 (1 seq.)
>PHG181005002
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
15558
15486
-
Thr
CGT
[ENA]
¡û
Identical group No.725997 (1 seq.)
>PHG181008582
MH576973
Siphoviridae
Mycobacterium phage Bromden (MH576973)
64745
64817
+
Thr
CGT
[ENA]
¡û
Identical group No.731980 (1 seq.)
>PHG181008423
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
5046
4974
-
Thr
CGT
[ENA]
¡û
Identical group No.760734 (1 seq.)
>PHG181008388
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
4382
4310
-
Thr
CGT
[ENA]
¡û
Identical group No.779625 (1 seq.)
>PHG14103311
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
16941
16870
-
Thr
CGT
[ENA]
¡û
Identical group No.786859 (3 seq.)
>PHG181001714
KT591489
Siphoviridae
Mycobacterium phage Archie (KT591489)
62616
62687
+
Thr
CGT
[ENA]
¡û
>PHG181003440
KX580962
Siphoviridae
Mycobacterium phage Wilder (KX580962)
62791
62862
+
Thr
CGT
[ENA]
¡û
>PHG181005202
MF324910
Siphoviridae
Mycobacterium phage GuuelaD (MF324910)
62780
62851
+
Thr
CGT
[ENA]
¡û
Identical group No.814997 (2 seq.)
>PHG181005338
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
14427
14356
-
Thr
CGT
[ENA]
¡û
>PHG181005372
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
14418
14347
-
Thr
CGT
[ENA]
¡û
Identical group No.815015 (1 seq.)
>PHG181008622
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
4395
4324
-
Thr
CGT
[ENA]
¡û
Identical group No.823682 (1 seq.)
>PHG181002131
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
106481
106554
+
Thr
CGT
[ENA]
¡û
Identical group No.833169 (1 seq.)
>PHG181005490
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
16961
16890
-
Thr
CGT
[ENA]
¡û
Identical group No.835218 (1 seq.)
>PHG181003678
KX925554
Myoviridae
Streptomyces phage BRock (KX925554)
104852
104781
-
Thr
CGT
[ENA]
¡û
Identical group No.836941 (1 seq.)
>PHG181004240
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
70588
70661
+
Thr
CGT
[ENA]
¡û
Identical group No.836947 (1 seq.)
>PHG181007237
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
4965
4894
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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