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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CTA
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127318 (2 seq.)
>PHG0100626
M10164
Myoviridae
Escherichia virus T4 fHe-Yen9-03 (M10164)
1
87
+
Sup
CTA
[ENA]
¡û
>PHG181004768
M10164
Myoviridae
Escherichia virus T4 fHe-Yen9-03 (M10164)
1
87
+
STOP
CTA
[ENA]
¡û
Identical group No.127319 (2 seq.)
>PHG0100625
M10163
Myoviridae
Escherichia virus T4 fHe-Yen9-03 (M10163)
1
87
+
Sup
CTA
[ENA]
¡û
>PHG181004767
M10163
Myoviridae
Escherichia virus T4 fHe-Yen9-03 (M10163)
1
87
+
STOP
CTA
[ENA]
¡û
Identical group No.137281 (2 seq.)
>PHG0100627
M10165
Myoviridae
Escherichia virus T4 fHe-Yen9-03 (M10165)
1
87
+
Sup
CTA
[ENA]
¡û
>PHG181004769
M10165
Myoviridae
Escherichia virus T4 fHe-Yen9-03 (M10165)
1
87
+
STOP
CTA
[ENA]
¡û
Identical group No.193698 (3 seq.)
>PHG0100632
M24831
Siphoviridae
Enterobacteria phage phi80 HA2 (M24831)
51
135
+
Sup
CTA
[ENA]
¡û
>PHG181004774
M24831
Siphoviridae
Enterobacteria phage phi80 HA2 (M24831)
51
135
+
STOP
CTA
[ENA]
¡û
>PHG14103426
M24831
Siphoviridae
Enterobacteria phage phi80 HA2 (M24831)
51
135
+
Sup
CTA
[ENA]
¡û
Identical group No.450686 (1 seq.)
>PHG181004487
LC168164
Myoviridae
Tenacibaculum phage pT24 (LC168164)
191520
191594
+
STOP
CTA
[ENA]
¡û
Identical group No.536331 (2 seq.)
>PHG181004705
LT960551
Myoviridae
Yersinia phage fHe-Yen9-04 (LT960551)
292524
292599
+
STOP
CTA
[ENA]
¡û
>PHG181004731
LT960552
Myoviridae
Yersinia phage fHe-Yen9-03 (LT960552)
290241
290316
+
STOP
CTA
[ENA]
¡û
Identical group No.561453 (1 seq.)
>PHG181006656
MG189906
Siphoviridae
Stenotrophomonas phage vB_SmaS_DLP_5 (MG189906)
50270
50343
+
STOP
CTA
[ENA]
¡û
Identical group No.592217 (2 seq.)
>PHG181000063
AP018399
Myoviridae
Xanthomonas phage XacN1 (AP018399)
36047
36122
+
STOP
CTA
[ENA]
¡û
>PHG181000088
AP018399
Myoviridae
Xanthomonas phage XacN1 (AP018399)
354842
354917
+
STOP
CTA
[ENA]
¡û
Identical group No.592218 (2 seq.)
>PHG181000064
AP018399
Myoviridae
Xanthomonas phage XacN1 (AP018399)
36130
36205
+
STOP
CTA
[ENA]
¡û
>PHG181000089
AP018399
Myoviridae
Xanthomonas phage XacN1 (AP018399)
354925
355000
+
STOP
CTA
[ENA]
¡û
Identical group No.611193 (1 seq.)
>PHG181004254
KY630187
Myoviridae
Serratia phage BF (KY630187)
289666
289741
+
STOP
CTA
[ENA]
¡û
Identical group No.684268 (2 seq.)
>PHG181007143
MG676224
Siphoviridae
Aeromonas phage AhSzq-1 (MG676224)
62795
62869
+
STOP
CTA
[ENA]
¡û
>PHG181007155
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
60691
60765
+
STOP
CTA
[ENA]
¡û
Identical group No.685829 (1 seq.)
>PHG14101407
JN882285
Myoviridae
Cronobacter phage vB_CsaM_GAP32 GAP-32 (JN882285)
293273
293345
+
Sup
CTA
[ENA]
¡û
Identical group No.750768 (1 seq.)
>PHG181002150
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
113763
113837
+
STOP
CTA
[ENA]
¡û
Identical group No.786869 (28 seq.)
>PHG0100548
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
93255
93327
+
Sup
CTA
[ENA]
¡û
>PHG0100568
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
92139
92211
+
Sup
CTA
[ENA]
¡û
>PHG0100588
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
93578
93650
+
Sup
CTA
[ENA]
¡û
>PHG181001615
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
94566
94638
+
STOP
CTA
[ENA]
¡û
>PHG181003586
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
92059
92131
+
STOP
CTA
[ENA]
¡û
>PHG181003624
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
93855
93927
+
STOP
CTA
[ENA]
¡û
>PHG181006192
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
92431
92503
+
STOP
CTA
[ENA]
¡û
>PHG181006215
MF919495
Myoviridae
Mycobacterium phage Bigswole (MF919495)
95187
95259
+
STOP
CTA
[ENA]
¡û
>PHG181006238
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
93140
93212
+
STOP
CTA
[ENA]
¡û
>PHG181006264
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
90989
91061
+
STOP
CTA
[ENA]
¡û
>PHG181006294
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
93879
93951
+
STOP
CTA
[ENA]
¡û
>PHG181007630
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
94435
94507
+
STOP
CTA
[ENA]
¡û
>PHG181007653
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
94254
94326
+
STOP
CTA
[ENA]
¡û
>PHG181007954
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
92817
92889
+
STOP
CTA
[ENA]
¡û
>PHG181007980
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
93137
93209
+
STOP
CTA
[ENA]
¡û
>PHG14100198
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
92188
92260
+
Sup
CTA
[ENA]
¡û
>PHG14100220
GQ303262
Myoviridae
Mycobacterium phage LRRHood ATCC 35860-B1 (GQ303262)
92845
92917
+
Sup
CTA
[ENA]
¡û
>PHG14100930
JF704116
Myoviridae
Mycobacterium phage Drazdys (JF704116)
92487
92559
+
Sup
CTA
[ENA]
¡û
>PHG14101188
JN624850
Myoviridae
Mycobacterium phage Pleione (JN624850)
93268
93340
+
Sup
CTA
[ENA]
¡û
>PHG14101279
JN699626
Myoviridae
Mycobacterium phage MoMoMixon (JN699626)
92594
92666
+
Sup
CTA
[ENA]
¡û
>PHG14101301
JN699627
Myoviridae
Mycobacterium phage Nappy (JN699627)
94096
94168
+
Sup
CTA
[ENA]
¡û
>PHG14101595
JQ911768
Myoviridae
Mycobacterium phage Ava3 Lu11 (JQ911768)
92572
92644
+
Sup
CTA
[ENA]
¡û
>PHG14102210
KC691257
Myoviridae
Mycobacterium phage Astraea Gb1 (KC691257)
91509
91581
+
Sup
CTA
[ENA]
¡û
>PHG14102231
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
94734
94806
+
Sup
CTA
[ENA]
¡û
>PHG14102255
KC748970
Myoviridae
Mycobacterium phage ArcherS7 Gb1 (KC748970)
93072
93144
+
Sup
CTA
[ENA]
¡û
>PHG14102439
KF006817
Myoviridae
Mycobacterium phage Breeniome phi47:1 (KF006817)
92084
92156
+
Sup
CTA
[ENA]
¡û
>PHG14102985
KJ595575
Myoviridae
Mycobacterium phage Willis LMSP-25 (KJ595575)
93036
93108
+
Sup
CTA
[ENA]
¡û
>PHG14103347
KM881426
Myoviridae
Mycobacterium phage ZygoTaiga pEcSw (KM881426)
94056
94128
+
Sup
CTA
[ENA]
¡û
Identical group No.793989 (1 seq.)
>PHG14100468
HM029250
Siphoviridae
Lactococcus phage 949 das13 (HM029250)
46865
46937
+
Sup
CTA
[ENA]
¡û
Identical group No.806155 (2 seq.)
>PHG14100867
JF704092
Myoviridae
Mycobacterium phage Alice MB56Spyo045 (JF704092)
92340
92412
+
Sup
CTA
[ENA]
¡û
>PHG14101066
JN204348
Myoviridae
Mycobacterium phage Sebata (JN204348)
94193
94265
+
Sup
CTA
[ENA]
¡û
Identical group No.812183 (6 seq.)
>PHG0100210
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
95436
95508
+
Sup
CTA
[ENA]
¡û
>PHG181003183
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
93141
93213
+
STOP
CTA
[ENA]
¡û
>PHG181003548
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
97314
97385
+
STOP
CTA
[ENA]
¡û
>PHG181007372
MG872839
Myoviridae
Mycobacterium phage LifeSavor (MG872839)
92301
92373
+
STOP
CTA
[ENA]
¡û
>PHG14101236
JN699013
Myoviridae
Mycobacterium phage Pio ThreeOh3D2 (JN699013)
96092
96164
+
Sup
CTA
[ENA]
¡û
>PHG14102481
KF024734
Myoviridae
Mycobacterium phage Shrimp phi47:1 (KF024734)
93804
93876
+
Sup
CTA
[ENA]
¡û
Identical group No.812620 (1 seq.)
>PHG14100453
HM004124
Myoviridae
Acinetobacter phage Acj9 das13 (HM004124)
82793
82721
-
Sup
CTA
[ENA]
¡û
Identical group No.814988 (1 seq.)
>PHG183000407
KU935715
Myoviridae
Acinetobacter phage vB_AbaM_ME3 (KU935715)
167421
167348
-
Sup
CTA
[ENA]
¡û
Identical group No.820589 (2 seq.)
>PHG181003524
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
93808
93880
+
STOP
CTA
[ENA]
¡û
>PHG181007322
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
95762
95834
+
STOP
CTA
[ENA]
¡û
Identical group No.833445 (1 seq.)
>PHG14300117
HQ698922
Myoviridae
Acinetobacter phage ZZ1 EcoS-CEV2 (HQ698922)
76269
76196
-
Sup
CTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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