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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
80 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170037172
CDYQ01000002
280478
Bacteroidota
GCC
Gly
>WENV170037174
CDYQ01000002
280478
Bacteroidota
GCC
Gly
>WENV170037219
CDYQ01002672
398836
Bacteroidota
GCA
Cys
>WENV170037226
CDYQ01003037
99847
Bacteroidota
GTA
Tyr
>WENV170037281
CDYQ01005928
488746
Bacteroidota
CTG
Gln
>WENV170037282
CDYQ01005928
20766
Bacteroidota
GGA
Ser
>WENV170037306
CDYQ01006636
398836
Bacteroidota
GCA
Cys
>WENV170037336
CDYQ01008333
399200
Bacteroidota
CAT
Met
>WENV170037345
CDYQ01008844
20449
Bacteroidota
GGA
Ser
>WENV170037364
CDYQ01009645
57807
Bacteroidota
TGA
Ser
>WENV170037368
CDYQ01009716
159415
Bacteroidota
TAC
Val
>WENV170037369
CDYQ01009716
159415
Bacteroidota
TAC
Val
>WENV170037389
CDYQ01010656
201819
Bacteroidota
CAT
Met
>WENV170037410
CDYQ01012378
99847
Bacteroidota
GTA
Tyr
>WENV170037430
CDYQ01013014
29791
Bacteroidota
GCT
Ser
>WENV170037431
CDYQ01013014
398860
Bacteroidota
CTC
Glu
>WENV170037434
CDYQ01013170
140771
Bacteroidota
>WENV170037438
CDYQ01013177
404109
Bacteroidota
CTC
Glu
>WENV170037439
CDYQ01013179
175904
Bacteroidota
CGG
Pro
>WENV170037458
CDYQ01013604
484496
Bacteroidota
TTG
Gln
>WENV170037493
CDYQ01014010
289031
Bacteroidota
CAT
Met
>WENV170037500
CDYQ01014583
175902
Bacteroidota
GGC
Ala
>WENV170037542
CDYQ01016614
483416
Bacteroidota
CTG
Gln
>WENV170037580
CDYQ01017891
398836
Bacteroidota
GCA
Cys
>WENV170037589
CDYQ01018553
280478
Bacteroidota
GCC
Gly
>WENV170037591
CDYQ01018553
280478
Bacteroidota
GCC
Gly
>WENV170037628
CDYQ01020334
56493
Bacteroidota
TGA
Ser
>WENV170037629
CDYQ01020339
398836
Bacteroidota
GCA
Cys
>WENV170037642
CDYQ01020741
117741
Bacteroidota
TAG
Leu
>WENV170037659
CDYQ01021433
175844
Bacteroidota
GGC
Ala
>WENV170037661
CDYQ01021457
480404
Bacteroidota
TTG
Gln
>WENV170037662
CDYQ01021751
201819
Bacteroidota
CAT
Met
>WENV170037665
CDYQ01021783
203954
Bacteroidota
GTC
Asp
>WENV170037672
CDYQ01022114
118432
Bacteroidota
CAG
Leu
>WENV170037673
CDYQ01022114
73509
Bacteroidota
GAG
Leu
>WENV170037685
CDYQ01022238
398836
Bacteroidota
GCA
Cys
>WENV170037690
CDYQ01022615
191205
Bacteroidota
TGG
Pro
>WENV170037696
CDYQ01022755
175903
Bacteroidota
GTG
His
>WENV170037705
CDYQ01023299
398828
Bacteroidota
CCG
Arg
>WENV170037719
CDYQ01023696
175944
Bacteroidota
CAT
Met
>WENV170037728
CDYQ01023927
280446
Bacteroidota
TTT
Lys
>WENV170037743
CDYQ01024340
484496
Bacteroidota
TTG
Gln
>WENV170037763
CDYQ01025771
99847
Bacteroidota
GTA
Tyr
>WENV170037765
CDYQ01025923
416636
Bacteroidota
TTC
Glu
>WENV170037767
CDYQ01026041
285360
Bacteroidota
TTT
Lys
>WENV170037775
CDYQ01026471
398829
Bacteroidota
CCT
Arg
>WENV170037791
CDYQ01027154
158068
Bacteroidota
GGG
Pro
>WENV170037803
CDYQ01028185
332896
Bacteroidota
TTT
Lys
>WENV170037811
CDYQ01028329
21127
Bacteroidota
GGA
Ser
>WENV170037813
CDYQ01028334
280557
Bacteroidota
CAT
Met
>WENV170037815
CDYQ01028367
175838
Bacteroidota
GTT
Asn
>WENV170037816
CDYQ01028367
175838
Bacteroidota
GTT
Asn
>WENV170037820
CDYQ01028708
398829
Bacteroidota
CCT
Arg
>WENV170037846
CDYQ01029439
140771
Bacteroidota
>WENV170037848
CDYQ01029439
140771
Bacteroidota
>WENV170037866
CDYQ01030555
20492
Bacteroidota
GGA
Ser
>WENV170037886
CDYQ01031626
332896
Bacteroidota
TTT
Lys
>WENV170037916
CDYQ01032337
284236
Bacteroidota
CGG
Pro
>WENV170037945
CDYQ01032764
398836
Bacteroidota
GCA
Cys
>WENV170037962
CDYQ01033871
56072
Bacteroidota
TAA
Leu
>WENV170037987
CDYQ01034443
46648
Bacteroidota
TAA
Leu
>WENV170037989
CDYQ01034444
332896
Bacteroidota
TTT
Lys
>WENV170038011
CDYQ01035504
280446
Bacteroidota
TTT
Lys
>WENV170038020
CDYQ01035787
118089
Bacteroidota
TAG
Leu
>WENV170038044
CDYQ01036534
176192
Bacteroidota
TCT
Arg
>WENV170038050
CDYQ01036784
332896
Bacteroidota
TTT
Lys
>WENV170038058
CDYQ01036920
56493
Bacteroidota
TGA
Ser
>WENV170038160
CDYQ01040146
483416
Bacteroidota
CTG
Gln
>WENV170038162
CDYQ01040148
280446
Bacteroidota
TTT
Lys
>WENV170038166
CDYQ01040342
332896
Bacteroidota
TTT
Lys
>WENV170038181
CDYQ01040906
398828
Bacteroidota
CCG
Arg
>WENV170038182
CDYQ01041280
488746
Bacteroidota
CTG
Gln
>WENV170038203
CDYQ01041999
140771
Bacteroidota
>WENV170038211
CDYQ01042022
186874
Bacteroidota
CAT
Met
>WENV170038215
CDYQ01042344
280451
Bacteroidota
CGT
Thr
>WENV170038220
CDYQ01042613
280451
Bacteroidota
CGT
Thr
>WENV170038245
CDYQ01043753
285750
Bacteroidota
CCC
Gly
>WENV170038248
CDYQ01043767
280557
Bacteroidota
CAT
Met
>WENV170038252
CDYQ01043824
332896
Bacteroidota
TTT
Lys
>WENV170038276
CDYQ01044900
20206
Bacteroidota
GGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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