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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
113 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV183793632
PVBE010029791
123265
Gammaproteobacteria
GAG
Leu
>WENV183793680
PVBE010033999
300318
Gammaproteobacteria
GGC
Ala
>WENV183793698
PVBE010035474
182374
Gammaproteobacteria
CAT
Met
>WENV183793812
PVBE010044512
311084
Gammaproteobacteria
GCC
Gly
>WENV183793813
PVBE010044512
480629
Gammaproteobacteria
GCA
Cys
>WENV183793998
PVBE010059601
283227
Gammaproteobacteria
TAC
Val
>WENV183793999
PVBE010059601
283227
Gammaproteobacteria
TAC
Val
>WENV183794000
PVBE010059601
283227
Gammaproteobacteria
TAC
Val
>WENV183794092
PVBE010066404
178164
Gammaproteobacteria
GAT
Ile
>WENV183794108
PVBE010068465
176554
Gammaproteobacteria
CAT
Met
>WENV183794158
PVBE010074075
211156
Gammaproteobacteria
CGG
Pro
>WENV183794230
PVBE010079500
211156
Gammaproteobacteria
CGG
Pro
>WENV183794252
PVBE010080626
185695
Gammaproteobacteria
CAT
Met
>WENV183794258
PVBE010081788
176301
Gammaproteobacteria
GAT
Ile
>WENV183794366
PVBE010091037
305254
Gammaproteobacteria
CCT
Arg
>WENV183794433
PVBE010097661
180678
Gammaproteobacteria
CCG
Arg
>WENV183794440
PVBE010098115
211156
Gammaproteobacteria
CGG
Pro
>WENV183794677
PVBE010112732
73819
Gammaproteobacteria
CAG
Leu
>WENV183794867
PVBE010129547
201377
Gammaproteobacteria
TGG
Pro
>WENV183795808
PVBE010200954
405482
Gammaproteobacteria
TTG
Gln
>WENV183796228
PVBE010231136
176301
Gammaproteobacteria
GAT
Ile
>WENV183796263
PVBE010233207
316303
Gammaproteobacteria
TTT
Lys
>WENV183796265
PVBE010233207
483085
Gammaproteobacteria
GCA
Cys
>WENV183796632
PVBE010266164
300318
Gammaproteobacteria
GGC
Ala
>WENV183796673
PVBE010270624
123265
Gammaproteobacteria
GAG
Leu
>WENV183796819
PVBE010281739
158246
Gammaproteobacteria
GTC
Asp
>WENV183796997
PVBE010295201
158246
Gammaproteobacteria
GTC
Asp
>WENV183797487
PVBE010338308
118205
Gammaproteobacteria
GTA
Tyr
>WENV183797817
PVBE010366726
290408
Gammaproteobacteria
GCC
Gly
>WENV183797818
PVBE010366726
290408
Gammaproteobacteria
GCC
Gly
>WENV183797950
PVBE010377128
185695
Gammaproteobacteria
CAT
Met
>WENV183797995
PVBE010381321
20618
Gammaproteobacteria
GGA
Ser
>WENV183798241
PVBE010401531
296680
Gammaproteobacteria
GTT
Asn
>WENV183798854
PVBE010454025
20487
Gammaproteobacteria
TGA
Ser
>WENV183798971
PVBE010463213
281313
Gammaproteobacteria
TTT
Lys
>WENV183799243
PVBE010489586
313852
Gammaproteobacteria
TTC
Glu
>WENV183799292
PVBE010494891
311084
Gammaproteobacteria
GCC
Gly
>WENV183799293
PVBE010494891
480629
Gammaproteobacteria
GCA
Cys
>WENV183799360
PVBE010500529
182374
Gammaproteobacteria
CAT
Met
>WENV183799413
PVBE010504781
280912
Gammaproteobacteria
TGC
Ala
>WENV183799804
PVBE010539327
201377
Gammaproteobacteria
TGG
Pro
>WENV183800124
PVBE010565473
185695
Gammaproteobacteria
CAT
Met
>WENV183800896
PVBE010626967
123265
Gammaproteobacteria
GAG
Leu
>WENV183801033
PVBE010639364
281275
Gammaproteobacteria
TGT
Thr
>WENV183801034
PVBE010639364
140800
Gammaproteobacteria
GTA
Tyr
>WENV183801035
PVBE010639364
399250
Gammaproteobacteria
TCC
Gly
>WENV183801203
PVBE010653583
201377
Gammaproteobacteria
TGG
Pro
>WENV183801320
PVBE010666153
307269
Gammaproteobacteria
TTC
Glu
>WENV183801333
PVBE010666786
211156
Gammaproteobacteria
CGG
Pro
>WENV183801367
PVBE010671002
117788
Gammaproteobacteria
TAG
Leu
>WENV183801369
PVBE010671002
117788
Gammaproteobacteria
TAG
Leu
>WENV183801452
PVBE010676495
300318
Gammaproteobacteria
GGC
Ala
>WENV183801889
PVBE010713189
483085
Gammaproteobacteria
GCA
Cys
>WENV183801894
PVBE010713962
118205
Gammaproteobacteria
GTA
Tyr
>WENV183801936
PVBE010718973
176301
Gammaproteobacteria
GAT
Ile
>WENV183801937
PVBE010718973
292006
Gammaproteobacteria
TGC
Ala
>WENV183801983
PVBE010722979
306872
Gammaproteobacteria
GGC
Ala
>WENV183802133
PVBE010732954
176301
Gammaproteobacteria
GAT
Ile
>WENV183802461
PVBE010762133
201377
Gammaproteobacteria
TGG
Pro
>WENV183802941
PVBE010799671
281279
Gammaproteobacteria
TAC
Val
>WENV183803079
PVBE010810491
208313
Gammaproteobacteria
GAC
Val
>WENV183803409
PVBE010842011
304066
Gammaproteobacteria
TTT
Lys
>WENV183803827
PVBE010878313
311084
Gammaproteobacteria
GCC
Gly
>WENV183803997
PVBE010893500
297858
Gammaproteobacteria
TGC
Ala
>WENV183804113
PVBE010900168
317782
Gammaproteobacteria
TAC
Val
>WENV183804208
PVBE010909271
311084
Gammaproteobacteria
GCC
Gly
>WENV183804346
PVBE010921453
311084
Gammaproteobacteria
GCC
Gly
>WENV183804499
PVBE010934357
281791
Gammaproteobacteria
GTG
His
>WENV183804763
PVBE010957330
311084
Gammaproteobacteria
GCC
Gly
>WENV183804764
PVBE010957330
480629
Gammaproteobacteria
GCA
Cys
>WENV183804859
PVBE010966120
480629
Gammaproteobacteria
GCA
Cys
>WENV183804924
PVBE010972536
158246
Gammaproteobacteria
GTC
Asp
>WENV183805241
PVBE011001091
480629
Gammaproteobacteria
GCA
Cys
>WENV183805344
PVBE011011620
216016
Gammaproteobacteria
CAT
Met
>WENV183805374
PVBE011013761
480629
Gammaproteobacteria
GCA
Cys
>WENV183805672
PVBE011042656
319139
Gammaproteobacteria
GCC
Gly
>WENV183805770
PVBE011050519
178473
Gammaproteobacteria
TGG
Pro
>WENV183806068
PVBE011080920
211156
Gammaproteobacteria
CGG
Pro
>WENV183806164
PVBE011090676
311084
Gammaproteobacteria
GCC
Gly
>WENV183806165
PVBE011090676
480629
Gammaproteobacteria
GCA
Cys
>WENV183806382
PVBE011113539
204522
Gammaproteobacteria
GAT
Ile
>WENV183806445
PVBE011118691
319139
Gammaproteobacteria
GCC
Gly
>WENV183806738
PVBE011142306
300318
Gammaproteobacteria
GGC
Ala
>WENV183806740
PVBE011142376
300318
Gammaproteobacteria
GGC
Ala
>WENV183806780
PVBE011146682
178164
Gammaproteobacteria
GAT
Ile
>WENV183807455
PVBE011200838
281282
Gammaproteobacteria
TTC
Glu
>WENV183807564
PVBE011209920
421616
Gammaproteobacteria
TTG
Gln
>WENV183807565
PVBE011209920
421616
Gammaproteobacteria
TTG
Gln
>WENV183807763
PVBE011229568
325309
Gammaproteobacteria
GCC
Gly
>WENV183807764
PVBE011229568
491391
Gammaproteobacteria
GCA
Cys
>WENV183807765
PVBE011229568
73504
Gammaproteobacteria
TAA
Leu
>WENV183807828
PVBE011236976
188358
Gammaproteobacteria
CAT
Met
>WENV183807862
PVBE011241206
312181
Gammaproteobacteria
TTT
Lys
>WENV183807864
PVBE011241367
185999
Gammaproteobacteria
CCG
Arg
>WENV183807876
PVBE011242296
300318
Gammaproteobacteria
GGC
Ala
>WENV183808115
PVBE011264274
209813
Gammaproteobacteria
GAT
Ile
>WENV183808116
PVBE011264274
317792
Gammaproteobacteria
TGC
Ala
>WENV183808535
PVBE011304669
180679
Gammaproteobacteria
CCA
Trp
>WENV183808623
PVBE011312916
401684
Gammaproteobacteria
CCT
Arg
>WENV183809253
PVBE011370346
300318
Gammaproteobacteria
GGC
Ala
>WENV183809683
PVBE011409911
158246
Gammaproteobacteria
GTC
Asp
>WENV183809822
PVBE011422619
176301
Gammaproteobacteria
GAT
Ile
>WENV183809891
PVBE011428856
285837
Gammaproteobacteria
TAC
Val
>WENV183810795
PVBE011515569
488965
Gammaproteobacteria
GCA
Cys
>WENV183810909
PVBE011527168
201377
Gammaproteobacteria
TGG
Pro
>WENV183810911
PVBE011527168
281283
Gammaproteobacteria
GTG
His
>WENV183810939
PVBE011529349
300318
Gammaproteobacteria
GGC
Ala
>WENV183810983
PVBE011534673
216016
Gammaproteobacteria
CAT
Met
>WENV183811057
PVBE011541999
176544
Gammaproteobacteria
CAT
Met
>WENV183811058
PVBE011541999
118640
Gammaproteobacteria
TAG
Leu
>WENV183811059
PVBE011541999
180681
Gammaproteobacteria
TGG
Pro
>WENV183811084
PVBE011545341
178164
Gammaproteobacteria
GAT
Ile
>WENV183811302
PVBE011569566
180052
Gammaproteobacteria
CCT
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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