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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170577751
FSSH01000778
273543
Alphaproteobacteria
ACG
Arg
>WENV170577730
FSSH01000643
282974
Alphaproteobacteria
GTG
His
>WENV170577570
FSSH01000208
780162
Alphaproteobacteria
TCC
Gly
>WENV170577671
FSSH01000509
780162
Alphaproteobacteria
TCC
Gly
>WENV170577915
FSSH01002675
780162
Alphaproteobacteria
TCC
Gly
>WENV170577754
FSSH01000838
454180
Alphaproteobacteria
CGT
Thr
>WENV170577602
FSSH01000257
45981
Alphaproteobacteria
TGA
Ser
>WENV170577978
FSSH01004481
465412
Alphaproteobacteria
GAA
Phe
>WENV170578097
FSSH01016532
273450
Alphaproteobacteria
TCT
Arg
>WENV170577770
FSSH01000989
180390
Alphaproteobacteria
CAA
Leu
>WENV170578090
FSSH01014494
452753
Alphaproteobacteria
GAA
Phe
>WENV170577476
FSSH01000044
661074
Alphaproteobacteria
GCC
Gly
>WENV170577979
FSSH01004483
112838
Alphaproteobacteria
GAG
Leu
>WENV170577813
FSSH01001534
180430
Alphaproteobacteria
CAG
Leu
>WENV170577569
FSSH01000207
655018
Alphaproteobacteria
TTC
Glu
>WENV170577722
FSSH01000608
655018
Alphaproteobacteria
TTC
Glu
>WENV170577605
FSSH01000258
452755
Alphaproteobacteria
TAC
Val
>WENV170577631
FSSH01000316
452755
Alphaproteobacteria
TAC
Val
>WENV170578001
FSSH01005544
452755
Alphaproteobacteria
TAC
Val
>WENV170578029
FSSH01006825
452755
Alphaproteobacteria
TAC
Val
>WENV170578095
FSSH01016462
452755
Alphaproteobacteria
TAC
Val
>WENV170577558
FSSH01000179
482436
Alphaproteobacteria
TGT
Thr
>WENV170577720
FSSH01000595
287497
Alphaproteobacteria
GTC
Asp
>WENV170578091
FSSH01015013
654791
Alphaproteobacteria
CTC
Glu
>WENV170577644
FSSH01000384
287630
Alphaproteobacteria
CAT
Met
>WENV170577603
FSSH01000257
454433
Alphaproteobacteria
TGT
Thr
>WENV170577769
FSSH01000988
454433
Alphaproteobacteria
TGT
Thr
>WENV170578016
FSSH01006049
454433
Alphaproteobacteria
TGT
Thr
>WENV170578017
FSSH01006050
454433
Alphaproteobacteria
TGT
Thr
>WENV170577917
FSSH01002949
655031
Alphaproteobacteria
CAC
Val
>WENV170577804
FSSH01001365
655013
Alphaproteobacteria
TGT
Thr
>WENV170578010
FSSH01005841
654915
Alphaproteobacteria
GCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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