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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1052905
SRR035098.297884
29701
Alphaproteobacteria
CGA
Ser
>SRA1053091
SRR035098.334286
29701
Alphaproteobacteria
CGA
Ser
>SRA1053162
SRR035098.350864
29701
Alphaproteobacteria
CGA
Ser
>SRA1053285
SRR035098.374291
29701
Alphaproteobacteria
CGA
Ser
>SRA1052040
SRR035098.128110
398995
Alphaproteobacteria
CAC
Val
>SRA1053104
SRR035098.338367
398995
Alphaproteobacteria
CAC
Val
>SRA1053902
SRR035098.532151
398995
Alphaproteobacteria
CAC
Val
>SRA1051699
SRR035098.61196
482561
Alphaproteobacteria
TCC
Gly
>SRA1053099
SRR035098.337125
482561
Alphaproteobacteria
TCC
Gly
>SRA1052972
SRR035098.310125
32398
Alphaproteobacteria
CGA
Ser
>SRA1053188
SRR035098.357932
399879
Alphaproteobacteria
GTT
Asn
>SRA1052739
SRR035098.264886
179720
Alphaproteobacteria
TGG
Pro
>SRA1053409
SRR035098.400457
179720
Alphaproteobacteria
TGG
Pro
>SRA1053592
SRR035098.446745
179720
Alphaproteobacteria
TGG
Pro
>SRA1051687
SRR035098.58383
399000
Alphaproteobacteria
TTC
Glu
>SRA1052073
SRR035098.135018
118213
Alphaproteobacteria
TAG
Leu
>SRA1052480
SRR035098.211687
398996
Alphaproteobacteria
GCC
Gly
>SRA1052944
SRR035098.305163
400848
Alphaproteobacteria
GAC
Val
>SRA1051846
SRR035098.87777
340918
Alphaproteobacteria
CGT
Thr
>SRA1052089
SRR035098.138391
340918
Alphaproteobacteria
CGT
Thr
>SRA1052495
SRR035098.214939
340918
Alphaproteobacteria
CGT
Thr
>SRA1052598
SRR035098.235379
340918
Alphaproteobacteria
CGT
Thr
>SRA1053486
SRR035098.417139
340918
Alphaproteobacteria
CGT
Thr
>SRA1053899
SRR035098.530741
340918
Alphaproteobacteria
CGT
Thr
>SRA1051698
SRR035098.60765
432650
Alphaproteobacteria
GAA
Phe
>SRA1053307
SRR035098.378821
432650
Alphaproteobacteria
GAA
Phe
>SRA1051814
SRR035098.81212
178784
Alphaproteobacteria
CAT
Met
>SRA1051891
SRR035098.94958
178784
Alphaproteobacteria
CAT
Met
>SRA1053470
SRR035098.412978
178784
Alphaproteobacteria
CAT
Met
>SRA1053117
SRR035098.341569
29841
Alphaproteobacteria
GGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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