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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1052921
SRR035098.300019
330237
Betaproteobacteria
>SRA1053169
SRR035098.354495
330237
Betaproteobacteria
>SRA1051588
SRR035098.35670
315138
Betaproteobacteria
TGT
Thr
>SRA1052957
SRR035098.308409
315138
Betaproteobacteria
TGT
Thr
>SRA1051490
SRR035098.14767
313624
Betaproteobacteria
CGT
Thr
>SRA1052285
SRR035098.175304
313624
Betaproteobacteria
CGT
Thr
>SRA1053033
SRR035098.322940
360678
Betaproteobacteria
GAA
Phe
>SRA1053688
SRR035098.468486
360678
Betaproteobacteria
GAA
Phe
>SRA1053810
SRR035098.502534
360678
Betaproteobacteria
GAA
Phe
>SRA1053545
SRR035098.433972
218654
Betaproteobacteria
GAC
Val
>SRA1052738
SRR035098.263981
528156
Betaproteobacteria
GCA
Cys
>SRA1053085
SRR035098.333325
528156
Betaproteobacteria
GCA
Cys
>SRA1052533
SRR035098.221459
312922
Betaproteobacteria
CCA
Trp
>SRA1052947
SRR035098.305957
316226
Betaproteobacteria
CCT
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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