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tRNADB-CE

: tRNA gene database curated manually by experts

Takashi Abe¹, Toshimichi Ikemura², Junichi Sugahara³, Akio Kanai³, Yasuo Ohara², Hiroshi Uehara², Makoto Kinouchi⁴,

Shigehiko Kanaya⁵, Yuko Yamada², Akira Muto⁶, Hachiro Inokuchi²

¹. Niigata Univ., ². Nagahama Inst. of Bio-Sci. and Tech., ³. Keio Univ., ⁴. Yamagata Univ., ⁵. NAIST, ⁶. Hirosaki Univ.

The detailed list of identical sequence groups that Betaproteobacteria and Gammaproteobacteria were mixed.

Cluster ID	Occupancy	Amino Acid	Anticodon	The detailed list (Phylum/Class name@number)
Cluster_243	88.89	SeC	TCA	Betaproteobacteria@1	Gammaproteobacteria@8
Cluster_1154	99.19	Ser	GGA	Betaproteobacteria@1	Gammaproteobacteria@123
Cluster_1185	87.50	Ser	GCT	Betaproteobacteria@1	Gammaproteobacteria@7
Cluster_2918	90.91	Ser	CGA	Betaproteobacteria@1	Gammaproteobacteria@10
Cluster_4420	98.98	Ser	TGA	Betaproteobacteria@1	Gammaproteobacteria@97
Cluster_4753	80.00	Ser	CGA	Betaproteobacteria@1	Gammaproteobacteria@4
Cluster_7888	82.35	Ser	TGA	Betaproteobacteria@14	Gammaproteobacteria@3
Cluster_10203	99.62	Leu	CAG	Betaproteobacteria@1	Gammaproteobacteria@259
Cluster_10494	92.31	Leu	TAA	Betaproteobacteria@1	Gammaproteobacteria@12
Cluster_10588	60.00	Leu	CAG	Betaproteobacteria@2	Gammaproteobacteria@3
Cluster_13144	99.18	Tyr	GTA	Betaproteobacteria@1	Gammaproteobacteria@121
Cluster_13224	90.91	Leu	CAA	Betaproteobacteria@1	Gammaproteobacteria@10
Cluster_14797	72.22	Tyr	GTA	Betaproteobacteria@13	Gammaproteobacteria@5
Cluster_15459	93.33	Leu	TAG	Betaproteobacteria@1	Gammaproteobacteria@14
Cluster_15460	93.18	Leu	CAG	Betaproteobacteria@3	Gammaproteobacteria@41
Cluster_15865	88.89	Leu	GAG	Betaproteobacteria@1	Gammaproteobacteria@8
Cluster_23923	92.00	Val	GAC	Betaproteobacteria@69	Gammaproteobacteria@6
Cluster_23925	66.60	Asp	GTC	Betaproteobacteria@157	Gammaproteobacteria@313
Cluster_23956	83.33	Met	CAT	Betaproteobacteria@1	Gammaproteobacteria@5
Cluster_23978	97.46	Asp	GTC	Betaproteobacteria@115	Gammaproteobacteria@3
Cluster_24013	98.70	Met	CAT	Betaproteobacteria@2	Gammaproteobacteria@152
Cluster_24022	62.09	Asp	GTC	Betaproteobacteria@570	Gammaproteobacteria@348
Cluster_24106	61.54	Val	GAC	Betaproteobacteria@5	Gammaproteobacteria@8
Cluster_24191	97.78	Asp	GTC	Betaproteobacteria@485	Deltaproteobacteria@1	Gammaproteobacteria@10
Cluster_24642	54.29	Val	GAC	Betaproteobacteria@96	Gammaproteobacteria@114
Cluster_24647	95.71	Asp	GTC	Betaproteobacteria@3	Gammaproteobacteria@67
Cluster_24998	80.00	Asp	GTC	Betaproteobacteria@8	Gammaproteobacteria@2
Cluster_25005	90.44	Met	CAT	Betaproteobacteria@2	Firmicutes@227	Gammaproteobacteria@17	Tenericutes@5
Cluster_25414	75.76	Asp	GTC	Betaproteobacteria@25	Gammaproteobacteria@8
Cluster_25580	98.52	Pro	GGG	Betaproteobacteria@2	Gammaproteobacteria@133
Cluster_26037	94.44	Met	CAT	Betaproteobacteria@1	Gammaproteobacteria@17
Cluster_26481	99.07	Gln	TTG	Betaproteobacteria@1	Gammaproteobacteria@107
Cluster_26482	99.24	Pro	TGG	Betaproteobacteria@1	Gammaproteobacteria@131
Cluster_26485	98.28	Asp	GTC	Betaproteobacteria@4	Gammaproteobacteria@229
Cluster_26486	98.80	Arg	CCT	Betaproteobacteria@1	Gammaproteobacteria@82
Cluster_26488	98.64	Asn	GTT	Betaproteobacteria@2	Gammaproteobacteria@145
Cluster_26492	99.18	Met	CAT	Betaproteobacteria@1	Gammaproteobacteria@121
Cluster_26493	97.01	Ile	GAT	Betaproteobacteria@4	Gammaproteobacteria@130
Cluster_26502	91.30	Met	CAT	Betaproteobacteria@2	Gammaproteobacteria@21
Cluster_27241	95.00	Arg	TCT	Betaproteobacteria@1	Gammaproteobacteria@19
Cluster_27242	92.86	His	GTG	Betaproteobacteria@1	Gammaproteobacteria@13
Cluster_27244	95.65	Arg	CCG	Betaproteobacteria@1	Gammaproteobacteria@22
Cluster_27245	91.67	Pro	GGG	Betaproteobacteria@1	Gammaproteobacteria@11
Cluster_28520	87.50	Asp	GTC	Betaproteobacteria@7	Gammaproteobacteria@1
Cluster_30055	93.75	Val	GAC	Betaproteobacteria@15	Gammaproteobacteria@1
Cluster_32983	57.14	Met	CAT	Betaproteobacteria@4	Gammaproteobacteria@3
Cluster_39981	78.95	His	GTG	Betaproteobacteria@12	Gammaproteobacteria@45
Cluster_39997	75.00	Thr	CGT	Betaproteobacteria@3	Gammaproteobacteria@9
Cluster_40089	80.00	Phe	GAA	Betaproteobacteria@4	Gammaproteobacteria@1
Cluster_40098	68.33	Ala	GGC	Alphaproteobacteria@82	Betaproteobacteria@3	Gammaproteobacteria@35
Cluster_40170	99.68	Thr	CGT	Betaproteobacteria@314	Gammaproteobacteria@1
Cluster_40172	96.85	Ala	CGC	Betaproteobacteria@553	Gammaproteobacteria@18
Cluster_40194	99.40	His	GTG	Betaproteobacteria@329	Gammaproteobacteria@2
Cluster_40413	91.67	Glu	TTC	Betaproteobacteria@1	Gammaproteobacteria@22
Cluster_40729	71.43	Thr	CGT	Betaproteobacteria@2	Gammaproteobacteria@5
Cluster_41103	52.50	Ala	GGC	Betaproteobacteria@38	Gammaproteobacteria@42
Cluster_41490	80.00	Thr	CGT	Betaproteobacteria@4	Gammaproteobacteria@1
Cluster_41681	71.43	Val	TAC	Betaproteobacteria@5	Gammaproteobacteria@2
Cluster_41707	98.94	His	GTG	Betaproteobacteria@93	Gammaproteobacteria@1
Cluster_42240	60.00	His	GTG	Betaproteobacteria@3	Gammaproteobacteria@2
Cluster_42546	83.33	Gly	GCC	Betaproteobacteria@1	Gammaproteobacteria@5
Cluster_42770	99.19	Trp	CCA	Betaproteobacteria@1	Gammaproteobacteria@123
Cluster_42771	99.12	Lys	CTT	Betaproteobacteria@1	Gammaproteobacteria@112
Cluster_42776	98.33	Ala	TGC	Betaproteobacteria@4	Gammaproteobacteria@236
Cluster_42791	95.77	Glu	TTC	Betaproteobacteria@3	Gammaproteobacteria@68
Cluster_42819	90.53	Thr	CGT	Betaproteobacteria@86	Gammaproteobacteria@9
Cluster_43589	92.86	Thr	TGT	Betaproteobacteria@1	Gammaproteobacteria@13
Cluster_43590	90.00	Thr	GGT	Betaproteobacteria@1	Gammaproteobacteria@9
Cluster_43591	96.30	Lys	CTT	Betaproteobacteria@1	Gammaproteobacteria@26
Cluster_43592	93.75	Thr	CGT	Betaproteobacteria@1	Gammaproteobacteria@15
Cluster_43593	91.67	Ala	CGC	Betaproteobacteria@1	Gammaproteobacteria@11
Cluster_43594	90.48	Phe	GAA	Betaproteobacteria@2	Gammaproteobacteria@19
Cluster_43595	90.00	Met	CAT	Betaproteobacteria@1	Gammaproteobacteria@9
Cluster_44056	94.44	Thr	CGT	Betaproteobacteria@1	Gammaproteobacteria@17
Cluster_44281	62.50	Ala	CGC	Betaproteobacteria@5	Gammaproteobacteria@3
Cluster_44409	77.78	Lys	TTT	Betaproteobacteria@2	Gammaproteobacteria@7
Cluster_45009	66.67	Thr	TGT	Betaproteobacteria@4	Gammaproteobacteria@2
Cluster_48549	50.00	Gly	GCC	Betaproteobacteria@4	Gammaproteobacteria@4
Cluster_48561	81.82	Ala	GGC	Betaproteobacteria@4	Gammaproteobacteria@18
Cluster_49638	88.89	Gly	GCC	Betaproteobacteria@1	Gammaproteobacteria@8
Cluster_57750	99.03	Val	CAC	Betaproteobacteria@204	Gammaproteobacteria@2
Cluster_58084	96.10	Gly	GCC	Betaproteobacteria@6	Gammaproteobacteria@148
Cluster_58438	80.00	Val	CAC	Betaproteobacteria@8	Gammaproteobacteria@2
Cluster_59014	98.39	Val	GAC	Betaproteobacteria@2	Gammaproteobacteria@122
Cluster_59016	98.55	Gln	CTG	Betaproteobacteria@1	Gammaproteobacteria@68
Cluster_59018	95.45	Val	CAC	Betaproteobacteria@1	Gammaproteobacteria@21
Cluster_59487	95.83	Val	TAC	Betaproteobacteria@1	Gammaproteobacteria@23
Cluster_59488	94.12	Glu	CTC	Betaproteobacteria@1	Gammaproteobacteria@16
Cluster_66492	79.03	Gly	CCC	Alphaproteobacteria@49	Betaproteobacteria@9	Gammaproteobacteria@4
Cluster_66541	55.70	Gly	CCC	Alphaproteobacteria@26	Betaproteobacteria@9	Gammaproteobacteria@44
Cluster_67068	94.12	Gly	TCC	Betaproteobacteria@1	Gammaproteobacteria@16
Cluster_67069	90.91	Cys	GCA	Betaproteobacteria@1	Gammaproteobacteria@10