This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
HIT:
102 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV171003036
NKIC01008060
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
9
83
+
Glu
TTC
[ENA]
¢þ
>WENV171002970
NKIC01000356
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
9
84
+
Phe
GAA
[ENA]
¢þ
>WENV171002968
NKIC01000118
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
17
107
+
Ser
GCT
[ENA]
¢þ
>WENV171003067
NKIC01008384
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
34
123
+
Ser
TGA
[ENA]
¢þ
>WENV171003026
NKIC01006360
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
35
110
+
Ala
GGC
[ENA]
¢þ
>WENV171003034
NKIC01007426
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
39
112
+
Gly
TCC
[ENA]
¢þ
>WENV171003013
NKIC01005352
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
40
113
+
Gly
CCC
[ENA]
¢þ
>WENV171003066
NKIC01008382
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
65
139
+
Arg
CCT
[ENA]
¢þ
>WENV171003061
NKIC01008297
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
80
172
+
Ser
GCT
[ENA]
¢þ
>WENV171002971
NKIC01000356
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
90
165
+
Gly
GCC
[ENA]
¢þ
>WENV171003030
NKIC01006563
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
92
5
-
Ser
GGA
[ENA]
¢þ
>WENV171003032
NKIC01007363
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
97
23
-
Arg
CCT
[ENA]
¢þ
>WENV171003025
NKIC01006319
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
107
23
-
Leu
CAG
[ENA]
¢þ
>WENV171002984
NKIC01001522
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
113
28
-
Leu
TAA
[ENA]
¢þ
>WENV171002966
NKIC01000072
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
129
53
-
Arg
ACG
[ENA]
¢þ
>WENV171002995
NKIC01002197
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
140
214
+
Thr
GGT
[ENA]
¢þ
>WENV171003039
NKIC01008069
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
154
78
-
Met
CAT
[ENA]
¢þ
>WENV171003015
NKIC01005639
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
156
232
+
Ile
GAT
[ENA]
¢þ
>WENV171003027
NKIC01006360
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
190
265
+
Glu
TTC
[ENA]
¢þ
>WENV171003008
NKIC01004904
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
201
117
-
Leu
CAG
[ENA]
¢þ
>WENV171003018
NKIC01005793
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
243
317
+
Met
CAT
[ENA]
¢þ
>WENV171003016
NKIC01005639
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
244
319
+
Ala
TGC
[ENA]
¢þ
>WENV171002992
NKIC01002118
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
245
320
+
Gly
GCC
[ENA]
¢þ
>WENV171003020
NKIC01005847
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
286
371
+
Tyr
GTA
[ENA]
¢þ
>WENV171002991
NKIC01002043
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
294
219
-
Thr
CGT
[ENA]
¢þ
>WENV171003028
NKIC01006360
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
316
391
+
Ala
GGC
[ENA]
¢þ
>WENV171003022
NKIC01006262
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
348
428
+
Leu
CAA
[ENA]
¢þ
>WENV171003019
NKIC01005793
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
363
439
+
Pro
TGG
[ENA]
¢þ
>WENV171003052
NKIC01008193
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
370
444
+
Arg
CCT
[ENA]
¢þ
>WENV171002987
NKIC01001667
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
373
448
+
Ala
TGC
[ENA]
¢þ
>WENV171003007
NKIC01003996
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
375
449
+
Val
CAC
[ENA]
¢þ
>WENV171002993
NKIC01002118
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
393
478
+
Leu
TAA
[ENA]
¢þ
>WENV171003033
NKIC01007409
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
399
474
+
Gly
GCC
[ENA]
¢þ
>WENV171002976
NKIC01000750
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
405
481
+
Ile
GAT
[ENA]
¢þ
>WENV171003035
NKIC01007824
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
407
334
-
Cys
GCA
[ENA]
¢þ
>WENV171003000
NKIC01002441
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
471
395
-
Val
GAC
[ENA]
¢þ
>WENV171003029
NKIC01006360
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
471
546
+
Glu
TTC
[ENA]
¢þ
>WENV171003031
NKIC01007142
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
475
551
+
Gln
CTG
[ENA]
¢þ
>WENV171002988
NKIC01001667
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
483
559
+
Ile
GAT
[ENA]
¢þ
>WENV171002981
NKIC01001235
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
498
411
-
Ser
TGA
[ENA]
¢þ
>WENV171002982
NKIC01001477
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
516
592
+
Ile
GAT
[ENA]
¢þ
>WENV171003021
NKIC01005904
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
527
452
-
Phe
GAA
[ENA]
¢þ
>WENV171003002
NKIC01002858
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
535
460
-
Ala
TGC
[ENA]
¢þ
>WENV171003017
NKIC01005665
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
542
618
+
Arg
CCT
[ENA]
¢þ
>WENV171002996
NKIC01002279
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
544
455
-
Ser
CGA
[ENA]
¢þ
>WENV171002999
NKIC01002441
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
552
476
-
Val
GAC
[ENA]
¢þ
>WENV171003012
NKIC01005340
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
565
637
+
Arg
CCT
[ENA]
¢þ
>WENV171003014
NKIC01005414
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
575
491
-
Leu
TAG
[ENA]
¢þ
>WENV171003009
NKIC01004993
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
587
513
-
Asn
GTT
[ENA]
¢þ
>WENV171002977
NKIC01000750
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
594
669
+
Ala
TGC
[ENA]
¢þ
>WENV171003011
NKIC01005312
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
599
513
-
Leu
GAG
[ENA]
¢þ
>WENV171002983
NKIC01001477
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
622
697
+
Ala
TGC
[ENA]
¢þ
>WENV171003005
NKIC01003283
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
629
554
-
Lys
TTT
[ENA]
¢þ
>WENV171003001
NKIC01002858
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
630
554
-
Ile
GAT
[ENA]
¢þ
>WENV171003010
NKIC01005023
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
654
578
-
Pro
TGG
[ENA]
¢þ
>WENV171003053
NKIC01008211
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
658
732
+
Ile
GAT
[ENA]
¢þ
>WENV171003006
NKIC01003738
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
682
768
+
Leu
TAG
[ENA]
¢þ
>WENV171003004
NKIC01003283
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
709
634
-
Val
TAC
[ENA]
¢þ
>WENV171002994
NKIC01002171
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
728
812
+
Leu
TAG
[ENA]
¢þ
>WENV171003057
NKIC01008229
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
787
864
+
Val
TAC
[ENA]
¢þ
>WENV171003054
NKIC01008211
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
875
951
+
Ala
TGC
[ENA]
¢þ
>WENV171003003
NKIC01002969
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
897
822
-
Thr
TGT
[ENA]
¢þ
>WENV171002997
NKIC01002292
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
917
842
-
Asn
GTT
[ENA]
¢þ
>WENV171002986
NKIC01001541
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
927
852
-
Trp
CCA
[ENA]
¢þ
>WENV171002978
NKIC01000899
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
958
885
-
Thr
AGT
[ENA]
¢þ
>WENV171002980
NKIC01001020
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
970
895
-
Ala
TGC
[ENA]
¢þ
>WENV171002990
NKIC01001672
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1003
928
-
Lys
TTT
[ENA]
¢þ
>WENV171002998
NKIC01002318
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1008
932
-
Met
CAT
[ENA]
¢þ
>WENV171003055
NKIC01008215
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1009
1085
+
Ile
GAT
[ENA]
¢þ
>WENV171002985
NKIC01001541
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1012
936
-
Asp
GTC
[ENA]
¢þ
>WENV171002973
NKIC01000428
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1035
1110
+
Phe
GAA
[ENA]
¢þ
>WENV171002979
NKIC01001020
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1101
1025
-
Ile
GAT
[ENA]
¢þ
>WENV171003056
NKIC01008215
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1116
1191
+
Ala
TGC
[ENA]
¢þ
>WENV171002975
NKIC01000551
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1303
1379
+
Arg
TCT
[ENA]
¢þ
>WENV171002972
NKIC01000405
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1405
1481
+
Pro
CGG
[ENA]
¢þ
>WENV171003045
NKIC01008083
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1593
1669
+
Ile
GAT
[ENA]
¢þ
>WENV171002974
NKIC01000477
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1680
1591
-
Ser
GGA
[ENA]
¢þ
>WENV171003046
NKIC01008083
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1765
1840
+
Ala
TGC
[ENA]
¢þ
>WENV171003040
NKIC01008071
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1864
1939
+
Ala
TGC
[ENA]
¢þ
>WENV171002969
NKIC01000181
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1906
1981
+
Lys
CTT
[ENA]
¢þ
>WENV171002967
NKIC01000096
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1934
2007
+
Met
CAT
[ENA]
¢þ
>WENV171003041
NKIC01008071
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
1944
2020
+
Ile
GAT
[ENA]
¢þ
>WENV171003043
NKIC01008081
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2067
2141
+
Ile
GAT
[ENA]
¢þ
>WENV171003044
NKIC01008081
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2156
2232
+
Ala
TGC
[ENA]
¢þ
>WENV171003065
NKIC01008341
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2178
2103
-
Ala
CGC
[ENA]
¢þ
>WENV171003049
NKIC01008150
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2236
2161
-
Ala
TGC
[ENA]
¢þ
>WENV171003062
NKIC01008305
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2251
2176
-
Glu
TTC
[ENA]
¢þ
>WENV171003048
NKIC01008150
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2345
2269
-
Ile
GAT
[ENA]
¢þ
>WENV171003059
NKIC01008235
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2488
2413
-
Ala
TGC
[ENA]
¢þ
>WENV171003060
NKIC01008290
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2521
2446
-
Phe
GAA
[ENA]
¢þ
>WENV171003058
NKIC01008235
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
2585
2509
-
Ile
GAT
[ENA]
¢þ
>WENV171003047
NKIC01008117
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
3193
3117
-
Pro
GGG
[ENA]
¢þ
>WENV171003051
NKIC01008166
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
3504
3428
-
Met
CAT
[ENA]
¢þ
>WENV171003038
NKIC01008069
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
3591
3516
-
Ala
TGC
[ENA]
¢þ
>WENV171003037
NKIC01008069
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
3747
3671
-
Ile
GAT
[ENA]
¢þ
>WENV171003024
NKIC01006267
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
3949
3873
-
Ile
GAT
[ENA]
¢þ
>WENV171002989
NKIC01001667
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
4009
4085
+
Met
CAT
[ENA]
¢þ
>WENV171003023
NKIC01006267
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
4036
3961
-
Ala
TGC
[ENA]
¢þ
>WENV171003064
NKIC01008341
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
19738
19665
-
Gln
CTG
[ENA]
¢þ
>WENV171003063
NKIC01008341
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
28495
28570
+
Lys
TTT
[ENA]
¢þ
>WENV171003050
NKIC01008165
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
47639
47565
-
Met
CAT
[ENA]
¢þ
>WENV171003042
NKIC01008076
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
65682
65606
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK