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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.103406 (42 seq.)
>A171000768
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
808345
808428
+
Ser
GGA
-
¡û
>A171002451
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1299129
1299211
+
Ser
GGA
-
¡û
>A171002629
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2821882
2821799
-
Ser
GGA
-
¡û
>A171005819
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1417534
1417451
-
Ser
GGA
-
¡û
>A171006853
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
1469553
1469634
+
Ser
GGA
-
¡û
>A171007257
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
1320291
1320210
-
Ser
GGA
-
¡û
>WENV180318313
OBKM01000382
[OBKM] metagenome; water
6035
5954
-
Ser
GGA
[ENA]
¢þ
>WENV181404269
OGBZ01009111
[OGBZ] sediment metagenome; hot spring sediment
397
478
+
Ser
GGA
[ENA]
¢þ
>WENV170009257
APHM01021947
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
8568
8484
-
Ser
GGA
[ENA]
¢þ
>At1688
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
289194
289275
+
Ser
GGA
[Ensembl]
¡û
>WENV170660023
JXWS01093521
[JXWS] soil metagenome; rice field; elevated CO2
313
397
+
Ser
GGA
[ENA]
¢þ
>WENV170681413
LFFM01000731
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
19164
19245
+
Ser
GGA
[ENA]
¢þ
>WENV170681615
LFFM01001682
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10548
10629
+
Ser
GGA
[ENA]
¢þ
>WENV170681922
LFFM01004028
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4644
4725
+
Ser
GGA
[ENA]
¢þ
>WENV170681968
LFFM01004373
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4456
4375
-
Ser
GGA
[ENA]
¢þ
>WENV170681983
LFFM01004552
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5463
5544
+
Ser
GGA
[ENA]
¢þ
>WENV170703184
LKMJ01007740
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5595
5514
-
Ser
GGA
[ENA]
¢þ
>WENV170704022
LKMJ01020863
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
45
126
+
Ser
GGA
[ENA]
¢þ
>W1910006665
BBJN01000029
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
12646
12728
+
Ser
GGA
[ENA]
¡û
>W1910006893
BBMO01000003
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
208867
208948
+
Ser
GGA
[ENA]
¡û
>W1910175111
BIXZ01000002
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
402029
401948
-
Ser
GGA
[ENA]
¡û
>W1910193791
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
2765795
2765714
-
Ser
GGA
[ENA]
¡û
>W1910226857
FNFC01000002
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
274129
274048
-
Ser
GGA
[ENA]
¡û
>W1910230627
FOXI01000006
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
43437
43356
-
Ser
GGA
[ENA]
¡û
>W1910230822
FOZK01000005
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
179783
179864
+
Ser
GGA
[ENA]
¡û
>W1910583055
JXAO01000016
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
6964
6881
-
Ser
GGA
[ENA]
¡û
>W1911709970
QPND01000004
Euryarchaeota
Saliphagus sp. LR7 [QPND]
282356
282437
+
Ser
GGA
[ENA]
¡û
>C151003916
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
2401499
2401580
+
Ser
GGA
[Ensembl]
¡û
>W1610000806
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
2918329
2918246
-
Ser
GGA
[ENA]
¡û
>W1610003254
AFNT02000002
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
101796
101877
+
Ser
GGA
[ENA]
¡û
>W1610003660
AGCY01000581
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
8568
8484
-
Ser
GGA
[ENA]
¡û
>W1610011982
AOHY01000008
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
46835
46754
-
Ser
GGA
[ENA]
¡û
>W1610014252
AOLW01000006
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
334832
334915
+
Ser
GGA
[ENA]
¡û
>W1610014328
AOLX01000023
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
78663
78744
+
Ser
GGA
[ENA]
¡û
>W1610061914
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2135894
2135811
-
Ser
GGA
[ENA]
¡û
>W1610617580
LGUC01000001
Euryarchaeota
Halolamina pelagica CDK2 [LGUC]
301447
301366
-
Ser
GGA
[ENA]
¡û
>W1610682148
LKMK01000213
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
4685
4604
-
Ser
GGA
[ENA]
¡û
>W1610682546
LKNC01000096
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
4644
4725
+
Ser
GGA
[ENA]
¡û
>W1610682633
LKNF01000121
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
5463
5544
+
Ser
GGA
[ENA]
¡û
>W1610682654
LKNG01000042
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
10548
10629
+
Ser
GGA
[ENA]
¡û
>W1610682686
LKNH01000105
Euryarchaeota
Halobacteriaceae archaeon Tc-Br11_E2g27 [LKNH]
4456
4375
-
Ser
GGA
[ENA]
¡û
>W1610881038
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
251740
251823
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK