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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127600 (32 seq.)
>A171000858
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
811074
811151
+
Pro
TGG
-
¡û
>A171001017
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1740857
1740780
-
Pro
TGG
-
¡û
>A171001259
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1157299
1157376
+
Pro
TGG
-
¡û
>A171001483
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1252456
1252533
+
Pro
TGG
-
¡û
>A171002208
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1003749
1003826
+
Pro
TGG
-
¡û
>A171004490
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1276804
1276727
-
Pro
TGG
-
¡û
>WENV180275581
OBHT01071785
[OBHT] metagenome; hydrothermal vent
180
103
-
Pro
TGG
[ENA]
¢þ
>WENV180287230
OBIK01003939
[OBIK] hydrothermal vent metagenome; sea water
171
94
-
Pro
TGG
[ENA]
¢þ
>WENV180287528
OBIK01109770
[OBIK] hydrothermal vent metagenome; sea water
146
69
-
Pro
TGG
[ENA]
¢þ
>WENV180287758
OBIL01002431
[OBIL] metagenome; hydrothermal vent
183
106
-
Pro
TGG
[ENA]
¢þ
>WENV180316916
OBKJ01001773
[OBKJ] metagenome; hydrothermal vent
240
317
+
Pro
TGG
[ENA]
¢þ
>WENV180332784
OBLD01138537
[OBLD] metagenome; water
81
4
-
Pro
TGG
[ENA]
¢þ
>WENV181212987
OFBU01003541
[OFBU] metagenome; hydrothermal vent
770
693
-
Pro
TGG
[ENA]
¢þ
>WENV181213466
OFBV01003765
[OFBV] metagenome; hydrothermal vent
1232
1309
+
Pro
TGG
[ENA]
¢þ
>WENV181214080
OFBW01010328
[OFBW] metagenome; hydrothermal vent
531
608
+
Pro
TGG
[ENA]
¢þ
>WENV181214376
OFBX01006299
[OFBX] metagenome; hydrothermal vent
285
208
-
Pro
TGG
[ENA]
¢þ
>WENV181214576
OFBY01002278
[OFBY] metagenome; hydrothermal vent
1521
1598
+
Pro
TGG
[ENA]
¢þ
>WENV181215065
OFBZ01002361
[OFBZ] metagenome; hydrothermal vent
627
704
+
Pro
TGG
[ENA]
¢þ
>WENV181215664
OFCA01006980
[OFCA] metagenome; hydrothermal vent
476
399
-
Pro
TGG
[ENA]
¢þ
>WENV181216148
OFCB01006168
[OFCB] metagenome; hydrothermal vent
952
1029
+
Pro
TGG
[ENA]
¢þ
>At0938
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
863570
863647
+
Pro
TGG
[Ensembl]
¡û
>At1164
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1127062
1127139
+
Pro
TGG
[Ensembl]
¡û
>W1910067441
BFAX01000003
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
37211
37134
-
Pro
TGG
[ENA]
¡û
>W1610000372
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
68978
69055
+
Pro
TGG
[ENA]
¡û
>W1610001105
ACQW01000003
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
82839
82916
+
Pro
TGG
[ENA]
¡û
>W1610001144
ACQY01000005
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
67879
67956
+
Pro
TGG
[ENA]
¡û
>W1610001536
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
478640
478717
+
Pro
TGG
[ENA]
¡û
>W1610001637
ADCA01000004
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
38928
38851
-
Pro
TGG
[ENA]
¡û
>W1610004275
AGJL01000001
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
56268
56191
-
Pro
TGG
[ENA]
¡û
>W1610018088
APMM01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
45250
45173
-
Pro
TGG
[ENA]
¡û
>W1610018638
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
965348
965425
+
Pro
TGG
[ENA]
¡û
>W1610018880
AQXV01000024
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
17177
17254
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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