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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127807 (23 seq.)
>W131222955
AUBR01000032
Bacillota
Desulfovirgula thermocuniculi DSM 16036 [AUBR]
38139
38062
-
Pro
CGG
[ENA]
¡û
>C018199
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
1475322
1475245
-
Pro
CGG
[Ensembl]
¡û
>C08004085
CP000860
Bacillota
Candidatus Desulforudis audaxviator MP104C [CP000860]
1169824
1169901
+
Pro
CGG
[Ensembl]
¡û
>W141278249
JAFF01000016
Bacillota
Thermacetogenium phaeum DSM 12270 [JAFF]
62776
62699
-
Pro
CGG
[ENA]
¡û
>WENV170020877
BBPF01000148
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
657
580
-
Pro
CGG
[ENA]
¢þ
>WENV170676856
LDZS01002628
[LDZS] terrestrial metagenome; oil reservoir sample K3
372
295
-
Pro
CGG
[ENA]
¢þ
>WENV170683762
LFRM01002858
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7970
7893
-
Pro
CGG
[ENA]
¢þ
>WENV170688125
LFRM01229036
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7965
7888
-
Pro
CGG
[ENA]
¢þ
>WENV170727022
LSQX01401830
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
30169
30092
-
Pro
CGG
[ENA]
¢þ
>W09135897
BAAC01000022
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
1151
1074
-
Pro
CGG
[ENA]
¡û
>W141702114
JMLG01000014
Bacillota
Desulfofundulus thermocisternus DSM 10259 [JMLG]
19102
19025
-
Pro
CGG
[ENA]
¡û
>W1810830080
QSLN01000007
Bacillota
Ammonifex thiophilus SR [QSLN]
64454
64531
+
Pro
CGG
[ENA]
¡û
>W1510081255
CDRZ01000258
Bacillota
Syntrophaceticus schinkii Sp3 [CDRZ]
14305
14228
-
Pro
CGG
[ENA]
¡û
>C10100377
CP001785
Bacillota
Ammonifex degensii KC4 [CP001785]
1249186
1249109
-
Pro
CGG
[Ensembl]
¡û
>C11107112
CP002770
Bacillota
Desulfofundulus kuznetsovii DSM 6115 [CP002770]
1465312
1465235
-
Pro
CGG
[Ensembl]
¡û
>C131005585
CP003732
Bacillota
Thermacetogenium phaeum DSM 12270 [CP003732]
972523
972600
+
Pro
CGG
[Ensembl]
¡û
>W1610607155
LFTQ01000128
Bacillota
Clostridia bacterium DTU068 [LFTQ]
7965
7888
-
Pro
CGG
[ENA]
¡û
>W1610613228
LGFO01000251
Bacillota
Thermacetogenium phaeum [LGFO]
372
295
-
Pro
CGG
[ENA]
¡û
>W1710574792
FOYM01000013
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
70781
70704
-
Pro
CGG
[ENA]
¡û
>W1710583544
FQUW01000031
Bacillota
Desulfofundulus australicus DSM 11792 [FQUW]
33922
33999
+
Pro
CGG
[ENA]
¡û
>W1710588570
FQZM01000010
Bacillota
Desulfofundulus thermosubterraneus DSM 16057 [FQZM]
47337
47260
-
Pro
CGG
[ENA]
¡û
>W1710728442
LFTQ01000128
Bacillota
Clostridia bacterium DTU068 [LFTQ]
7965
7888
-
Pro
CGG
[ENA]
¡û
>W1710734435
LGFO01000251
Bacillota
Thermacetogenium phaeum [LGFO]
372
295
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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