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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127815 (47 seq.)
>A171000281
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
785718
785642
-
Asp
GTC
-
¡û
>A171000283
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
785519
785444
-
Asp
GTC
-
¡û
>A171000476
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
619903
619980
+
Asp
GTC
-
¡û
>A171000861
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
811569
811646
+
Asp
GTC
-
¡û
>A171001020
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1740393
1740316
-
Asp
GTC
-
¡û
>A171001262
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1157793
1157870
+
Asp
GTC
-
¡û
>A171001486
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1252930
1253007
+
Asp
GTC
-
¡û
>A171001544
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1633852
1633927
+
Asp
GTC
-
¡û
>A171001546
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1634225
1634300
+
Asp
GTC
-
¡û
>A171002350
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
594180
594104
-
Asp
GTC
-
¡û
>A171002352
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
593815
593739
-
Asp
GTC
-
¡û
>A171004493
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1276305
1276228
-
Asp
GTC
-
¡û
>A171006578
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
878871
878948
+
Asp
GTC
-
¡û
>WENV180274904
OBHO01004241
[OBHO] metagenome; water
192
268
+
Asp
GTC
[ENA]
¢þ
>WENV180275525
OBHT01058737
[OBHT] metagenome; hydrothermal vent
50
127
+
Asp
GTC
[ENA]
¢þ
>WENV180287212
OBIK01002226
[OBIK] hydrothermal vent metagenome; sea water
167
243
+
Asp
GTC
[ENA]
¢þ
>WENV180287974
OBIL01024075
[OBIL] metagenome; hydrothermal vent
91
168
+
Asp
GTC
[ENA]
¢þ
>WENV180317055
OBKJ01012043
[OBKJ] metagenome; hydrothermal vent
552
475
-
Asp
GTC
[ENA]
¢þ
>WENV180332430
OBLD01007588
[OBLD] metagenome; water
471
548
+
Asp
GTC
[ENA]
¢þ
>WENV180332542
OBLD01038379
[OBLD] metagenome; water
98
22
-
Asp
GTC
[ENA]
¢þ
>WENV180332557
OBLD01044523
[OBLD] metagenome; water
222
298
+
Asp
GTC
[ENA]
¢þ
>WENV180582046
OCML01070068
[OCML] metagenome; diffuse fluid
140
64
-
Asp
GTC
[ENA]
¢þ
>WENV180582388
OCMO01077373
[OCMO] metagenome; diffuse fluid
93
17
-
Asp
GTC
[ENA]
¢þ
>WENV181206583
OFAW01000289
[OFAW] metagenome; hydrothermal vent
519
595
+
Asp
GTC
[ENA]
¢þ
>WENV181206767
OFAW01004973
[OFAW] metagenome; hydrothermal vent
103
180
+
Asp
GTC
[ENA]
¢þ
>WENV181207256
OFAY01006301
[OFAY] metagenome; hydrothermal vent
411
334
-
Asp
GTC
[ENA]
¢þ
>WENV181208343
OFBB01004576
[OFBB] metagenome; hydrothermal vent
1214
1138
-
Asp
GTC
[ENA]
¢þ
>WENV181213456
OFBV01003394
[OFBV] metagenome; hydrothermal vent
1459
1382
-
Asp
GTC
[ENA]
¢þ
>WENV181214579
OFBY01002278
[OFBY] metagenome; hydrothermal vent
2019
2096
+
Asp
GTC
[ENA]
¢þ
>WENV181215235
OFBZ01011559
[OFBZ] metagenome; hydrothermal vent
777
700
-
Asp
GTC
[ENA]
¢þ
>WENV181216075
OFCB01002932
[OFCB] metagenome; hydrothermal vent
1829
1752
-
Asp
GTC
[ENA]
¢þ
>WENV181223892
OFDD01002492
[OFDD] metagenome; hydrothermal vent
353
430
+
Asp
GTC
[ENA]
¢þ
>WENV181224806
OFDG01005592
[OFDG] metagenome; hydrothermal vent
696
773
+
Asp
GTC
[ENA]
¢þ
>WENV181225539
OFDI01006638
[OFDI] metagenome; hydrothermal vent
690
767
+
Asp
GTC
[ENA]
¢þ
>At0941
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
864064
864141
+
Asp
GTC
[Ensembl]
¡û
>At1093
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1072456
1072530
+
Asp
GTC
[Ensembl]
¡û
>At1095
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1072657
1072731
+
Asp
GTC
[Ensembl]
¡û
>W1610000375
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
69394
69469
+
Asp
GTC
[ENA]
¡û
>W1610000377
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
69615
69690
+
Asp
GTC
[ENA]
¡û
>W1610000474
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
700483
700406
-
Asp
GTC
[ENA]
¡û
>W1610000476
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
700282
700207
-
Asp
GTC
[ENA]
¡û
>W1610001108
ACQW01000003
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
83334
83411
+
Asp
GTC
[ENA]
¡û
>W1610001147
ACQY01000005
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
68354
68431
+
Asp
GTC
[ENA]
¡û
>W1610001539
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
479104
479181
+
Asp
GTC
[ENA]
¡û
>W1610001640
ADCA01000004
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
38434
38357
-
Asp
GTC
[ENA]
¡û
>W1610018641
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
965813
965890
+
Asp
GTC
[ENA]
¡û
>W1630000634
APMM01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
44786
44709
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK