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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133386 (34 seq.)
>A178000284
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
22451
22555
+
Arg
TCT
-
¡û
>A178000444
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
2038820
2038925
+
Arg
TCT
-
¡û
>A178000520
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1614700
1614804
+
Arg
TCT
-
¡û
>A179000093
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
912487
912590
+
Arg
TCT
-
¡û
>WENV180318336
OBKM01000433
[OBKM] metagenome; water
19836
19910
+
Arg
TCT
[ENA]
¢þ
>WENV180318354
OBKM01000494
[OBKM] metagenome; water
6832
6758
-
Arg
TCT
[ENA]
¢þ
>WENV180318713
OBKM01006234
[OBKM] metagenome; water
2567
2493
-
Arg
TCT
[ENA]
¢þ
>At0762
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2436991
2437095
+
Arg
TCT
[Ensembl]
¡û
>At1689
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
434096
434200
+
Arg
TCT
[Ensembl]
¡û
>WENV170681122
LFFM01000078
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
38642
38716
+
Arg
TCT
[ENA]
¢þ
>WENV170681993
LFFM01004679
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
3949
4023
+
Arg
TCT
[ENA]
¢þ
>WENV170682210
LFFM01007269
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5923
5846
-
Arg
TCT
[ENA]
¢þ
>W1910006745
BBJP01000013
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
137090
137164
+
Arg
TCT
[ENA]
¡û
>W1910006930
BBMP01000022
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
376457
376383
-
Arg
TCT
[ENA]
¡û
>W1910228455
FNPC01000001
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
493183
493109
-
Arg
TCT
[ENA]
¡û
>W1910572762
JNFH02000051
Euryarchaeota
Halorubrum saccharovorum H3 [JNFH]
17286
17212
-
Arg
TCT
[ENA]
¡û
>W1910575001
JQKV01000002
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
820035
820110
+
Arg
TCT
[ENA]
¡û
>W1910911742
NHOA01000084
Euryarchaeota
Halorubrum persicum C49 [NHOA]
47477
47551
+
Arg
TCT
[ENA]
¡û
>W1910912469
NHPI01001626
Euryarchaeota
Halorubrum sp. E3 [NHPI]
142
216
+
Arg
TCT
[ENA]
¡û
>W1910912485
NHPJ01000003
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
35108
35034
-
Arg
TCT
[ENA]
¡û
>W1911493162
OBEJ01000003
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
492571
492645
+
Arg
TCT
[ENA]
¡û
>W1911709679
QPLS01000003
Euryarchaeota
Halorubrum sp. Atlit-28R [QPLS]
19043
19117
+
Arg
TCT
[ENA]
¡û
>W1911709737
QPLT01000007
Euryarchaeota
Halorubrum sp. Atlit-26R [QPLT]
39146
39072
-
Arg
TCT
[ENA]
¡û
>W1911709805
QPLU01000005
Euryarchaeota
Halorubrum sp. Atlit-9R [QPLU]
130236
130162
-
Arg
TCT
[ENA]
¡û
>W1911709851
QPLV01000005
Euryarchaeota
Halorubrum sp. Atlit-8R [QPLV]
130236
130162
-
Arg
TCT
[ENA]
¡û
>W1911749402
QWGG01000002
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
526222
526148
-
Arg
TCT
[ENA]
¡û
>W1610005953
ALWQ01000006
Euryarchaeota
Halorubrum sp. T3 [ALWQ]
69850
69776
-
Arg
TCT
[ENA]
¡û
>W1610013264
AOJK01000059
Euryarchaeota
Halorubrum californiense DSM 19288 [AOJK]
29798
29724
-
Arg
TCT
[ENA]
¡û
>W1610013356
AOJM01000079
Euryarchaeota
Halorubrum distributum JCM 9100 [AOJM]
81511
81434
-
Arg
TCT
[ENA]
¡û
>W1610013375
AOJN01000023
Euryarchaeota
Halorubrum distributum JCM 10118 [AOJN]
124507
124430
-
Arg
TCT
[ENA]
¡û
>W1610014536
AOMC01000046
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
110960
111036
+
Arg
TCT
[ENA]
¡û
>W1610014675
AOMF01000155
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
124613
124687
+
Arg
TCT
[ENA]
¡û
>W1610021319
ATCR02000005
Euryarchaeota
haloarchaeon 3A1-DGR 3A1_DGR [ATCR]
203450
203376
-
Arg
TCT
[ENA]
¡û
>W1610779635
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
2013338
2013264
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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