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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147661 (23 seq.)
>A171000023
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1870254
1870179
-
Lys
TTT
-
¡û
>A171007279
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
2351461
2351534
+
Lys
TTT
-
¡û
>A171007467
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
41024
40950
-
Lys
TTT
-
¡û
>WENV180318223
OBKM01000114
[OBKM] metagenome; water
37452
37526
+
Lys
TTT
[ENA]
¢þ
>WENV180318305
OBKM01000351
[OBKM] metagenome; water
14505
14431
-
Lys
TTT
[ENA]
¢þ
>WENV180318439
OBKM01000869
[OBKM] metagenome; water
7772
7696
-
Lys
TTT
[ENA]
¢þ
>WENV180318874
OBKM01023633
[OBKM] metagenome; water
555
629
+
Lys
TTT
[ENA]
¢þ
>At0838
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1882136
1882063
-
Lys
TTT
[Ensembl]
¡û
>At1691
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
560890
560963
+
Lys
TTT
[Ensembl]
¡û
>WENV170681832
LFFM01003326
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
257
184
-
Lys
TTT
[ENA]
¢þ
>WENV170682251
LFFM01007977
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4642
4569
-
Lys
TTT
[ENA]
¢þ
>WENV170701823
LKMJ01000029
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
57024
56950
-
Lys
TTT
[ENA]
¢þ
>WENV170702087
LKMJ01000503
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
21222
21149
-
Lys
TTT
[ENA]
¢þ
>WENV170702496
LKMJ01002277
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7656
7583
-
Lys
TTT
[ENA]
¢þ
>W1910230014
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
1620656
1620730
+
Lys
TTT
[ENA]
¡û
>W1610061872
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
2571840
2571766
-
Lys
TTT
[ENA]
¡û
>W1610085071
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
1304778
1304705
-
Lys
TTT
[ENA]
¡û
>W1610085098
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
154862
154935
+
Lys
TTT
[ENA]
¡û
>W1610085137
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
197063
197136
+
Lys
TTT
[ENA]
¡û
>W1610085176
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
196678
196751
+
Lys
TTT
[ENA]
¡û
>W1610085237
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
2362102
2362029
-
Lys
TTT
[ENA]
¡û
>W1610085270
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
1304862
1304789
-
Lys
TTT
[ENA]
¡û
>W1610085319
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
2318706
2318633
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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