This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16815 (144 seq.)
>W131002368
AGYT01000014
Bacillota
Clostridium thermobutyricum 209318 [AGYT]
199724
199634
-
Ser
TGA
[ENA]
¡û
>W131002370
AGYT01000014
Bacillota
Clostridium thermobutyricum 209318 [AGYT]
196919
196829
-
Ser
TGA
[ENA]
¡û
>W1711090824
LTAY01000059
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
6397
6487
+
Ser
TGA
[ENA]
¡û
>W1711090826
LTAY01000059
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
9208
9298
+
Ser
TGA
[ENA]
¡û
>W1711308457
MAPZ01000024
Bacillota
Clostridium paraputrificum [MAPZ]
5216
5306
+
Ser
TGA
[ENA]
¡û
>W1711308458
MAPZ01000024
Bacillota
Clostridium paraputrificum [MAPZ]
6293
6383
+
Ser
TGA
[ENA]
¡û
>W131232267
AUJC01000009
Bacillota
Clostridium paraputrificum AGR2156 [AUJC]
191533
191443
-
Ser
TGA
[ENA]
¡û
>W131232268
AUJC01000009
Bacillota
Clostridium paraputrificum AGR2156 [AUJC]
190455
190365
-
Ser
TGA
[ENA]
¡û
>W131252524
CBML010000007
Bacillota
Clostridium chauvoei JF4335 [CBML]
7964
8054
+
Ser
TGA
[ENA]
¡û
>W131252525
CBML010000007
Bacillota
Clostridium chauvoei JF4335 [CBML]
8174
8264
+
Ser
TGA
[ENA]
¡û
>C171131101
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
28280
28370
+
Ser
TGA
-
¡û
>C171131102
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
28490
28580
+
Ser
TGA
-
¡û
>WENV180122536
OASU01001008
[OASU] human gut metagenome; faeces
4207
4297
+
Ser
TGA
[ENA]
¢þ
>WENV180275823
OBHU01000411
[OBHU] human gut metagenome; feces
7589
7679
+
Ser
TGA
[ENA]
¢þ
>WENV180275824
OBHU01000411
[OBHU] human gut metagenome; feces
7936
8026
+
Ser
TGA
[ENA]
¢þ
>WENV180476897
OBYZ01000044
[OBYZ] human gut metagenome; faeces
7612
7702
+
Ser
TGA
[ENA]
¢þ
>WENV180476898
OBYZ01000044
[OBYZ] human gut metagenome; faeces
7959
8049
+
Ser
TGA
[ENA]
¢þ
>WENV180486262
OBZL01000107
[OBZL] human gut metagenome; faeces
5049
5139
+
Ser
TGA
[ENA]
¢þ
>WENV180486263
OBZL01000107
[OBZL] human gut metagenome; faeces
6128
6218
+
Ser
TGA
[ENA]
¢þ
>WENV180941613
ODTZ01008004
[ODTZ] human metagenome; G_DNA_Stool
399
309
-
Ser
TGA
[ENA]
¢þ
>WENV180963617
ODUN01288997
[ODUN] human metagenome; G_DNA_Stool
118
208
+
Ser
TGA
[ENA]
¢þ
>WENV181005798
ODVZ01003069
[ODVZ] human metagenome; G_DNA_Posterior fornix
128
38
-
Ser
TGA
[ENA]
¢þ
>W141111879
AVSV01000049
Bacillota
Clostridium sp. Ade.TY [AVSV]
5471
5561
+
Ser
TGA
[ENA]
¡û
>W141111880
AVSV01000049
Bacillota
Clostridium sp. Ade.TY [AVSV]
5934
6024
+
Ser
TGA
[ENA]
¡û
>WENV181219422
OFCO01002103
[OFCO] metagenome; Human gut stool
104
194
+
Ser
TGA
[ENA]
¢þ
>WENV181220384
OFCQ01003765
[OFCQ] metagenome; Human gut stool
271
361
+
Ser
TGA
[ENA]
¢þ
>WENV181220626
OFCR01007572
[OFCR] metagenome; Human gut stool
458
368
-
Ser
TGA
[ENA]
¢þ
>WENV181221550
OFCV01004725
[OFCV] metagenome; Human gut stool
96
186
+
Ser
TGA
[ENA]
¢þ
>WENV181225910
OFDJ01001588
[OFDJ] metagenome; Human gut stool
1641
1731
+
Ser
TGA
[ENA]
¢þ
>WENV181225911
OFDJ01001588
[OFDJ] metagenome; Human gut stool
2720
2810
+
Ser
TGA
[ENA]
¢þ
>WENV181463755
OGEO01030727
[OGEO] metagenome; Human gut stool
672
582
-
Ser
TGA
[ENA]
¢þ
>WENV181741085
OGQJ01060736
[OGQJ] human gut metagenome; faeces
73
163
+
Ser
TGA
[ENA]
¢þ
>WENV181764342
OGQX01071798
[OGQX] human gut metagenome; faeces
527
617
+
Ser
TGA
[ENA]
¢þ
>WENV181798789
OGRX01000280
[OGRX] human gut metagenome; fecal sample 2 from infant 8
4938
5028
+
Ser
TGA
[ENA]
¢þ
>WENV181802036
OGSC01001541
[OGSC] human gut metagenome; fecal sample 8 from infant 5
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV181804468
OGSF01001063
[OGSF] human gut metagenome; fecal sample 3 from infant 5
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV181805158
OGSH01001022
[OGSH] human gut metagenome; fecal sample 5 from infant 6
5325
5415
+
Ser
TGA
[ENA]
¢þ
>WENV181805915
OGSJ01001508
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
5325
5415
+
Ser
TGA
[ENA]
¢þ
>WENV181806285
OGSK01000732
[OGSK] human gut metagenome; fecal sample 2 from infant 5
4758
4848
+
Ser
TGA
[ENA]
¢þ
>WENV181807384
OGSO01000333
[OGSO] human gut metagenome; fecal sample 3 from infant 6
5107
5197
+
Ser
TGA
[ENA]
¢þ
>WENV181808238
OGSR01000415
[OGSR] human gut metagenome; fecal sample 8 from infant 2
4784
4874
+
Ser
TGA
[ENA]
¢þ
>WENV181809680
OGST01001460
[OGST] human gut metagenome; fecal sample 7 from infant 6
4784
4874
+
Ser
TGA
[ENA]
¢þ
>WENV181810135
OGSU01001346
[OGSU] human gut metagenome; fecal sample 7 from infant 5
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV181810970
OGSX01000213
[OGSX] human gut metagenome; fecal sample 1 from infant 8
4759
4849
+
Ser
TGA
[ENA]
¢þ
>WENV181810971
OGSX01000213
[OGSX] human gut metagenome; fecal sample 1 from infant 8
5837
5927
+
Ser
TGA
[ENA]
¢þ
>WENV181811405
OGSY01001634
[OGSY] human gut metagenome; fecal sample 5 from infant 8
4987
5077
+
Ser
TGA
[ENA]
¢þ
>WENV181811759
OGSZ01001339
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV181814862
OGTH01000688
[OGTH] human gut metagenome; fecal sample 4 from infant 6
4988
5078
+
Ser
TGA
[ENA]
¢þ
>WENV181821355
OGUE01000817
[OGUE] human gut metagenome; fecal sample 1 from infant 5
4977
5067
+
Ser
TGA
[ENA]
¢þ
>WENV181826143
OGUL01006215
[OGUL] human gut metagenome; faeces
593
503
-
Ser
TGA
[ENA]
¢þ
>WENV181834586
OGUR01004780
[OGUR] metagenome; Human gut stool
1191
1281
+
Ser
TGA
[ENA]
¢þ
>WENV182037632
OHDD01006169
[OHDD] human gut metagenome; feces
1675
1765
+
Ser
TGA
[ENA]
¢þ
>WENV182109036
OHIM01011635
[OHIM] human gut metagenome; feces
1394
1304
-
Ser
TGA
[ENA]
¢þ
>WENV182159263
OHMA01003872
[OHMA] human gut metagenome; feces
4082
4171
+
Ser
TGA
[ENA]
¢þ
>WENV182407465
OIFD01000031
[OIFD] human gut metagenome; stool
166608
166518
-
Ser
TGA
[ENA]
¢þ
>WENV182407466
OIFD01000031
[OIFD] human gut metagenome; stool
165530
165440
-
Ser
TGA
[ENA]
¢þ
>WENV182409585
OIFJ01000029
[OIFJ] human gut metagenome; stool
4780
4870
+
Ser
TGA
[ENA]
¢þ
>WENV182409586
OIFJ01000029
[OIFJ] human gut metagenome; stool
5858
5948
+
Ser
TGA
[ENA]
¢þ
>WENV182410059
OIFK01000028
[OIFK] human gut metagenome; stool
5021
5111
+
Ser
TGA
[ENA]
¢þ
>WENV182410060
OIFK01000028
[OIFK] human gut metagenome; stool
6100
6190
+
Ser
TGA
[ENA]
¢þ
>WENV182410754
OIFM01000011
[OIFM] human gut metagenome; stool
4781
4871
+
Ser
TGA
[ENA]
¢þ
>WENV182410755
OIFM01000011
[OIFM] human gut metagenome; stool
5859
5949
+
Ser
TGA
[ENA]
¢þ
>WENV182411740
OIFQ01000021
[OIFQ] human gut metagenome; stool
166608
166518
-
Ser
TGA
[ENA]
¢þ
>WENV182411741
OIFQ01000021
[OIFQ] human gut metagenome; stool
165530
165440
-
Ser
TGA
[ENA]
¢þ
>WENV182656228
OJMJ01002105
[OJMJ] human gut metagenome; feces
2981
2891
-
Ser
TGA
[ENA]
¢þ
>WENV182663695
OJMO01030491
[OJMO] human gut metagenome; feces
180
90
-
Ser
TGA
[ENA]
¢þ
>WENV182807419
OJVW01001176
[OJVW] human gut metagenome; human gut
1785
1875
+
Ser
TGA
[ENA]
¢þ
>WENV182808753
OJWI01001854
[OJWI] human gut metagenome; human gut
361
271
-
Ser
TGA
[ENA]
¢þ
>WENV182809289
OJWO01001203
[OJWO] human gut metagenome; human gut
1181
1091
-
Ser
TGA
[ENA]
¢þ
>WENV182823633
OKBV01001651
[OKBV] human gut metagenome; human gut
1849
1939
+
Ser
TGA
[ENA]
¢þ
>WENV182827636
OKDB01001221
[OKDB] human gut metagenome; human gut
2334
2424
+
Ser
TGA
[ENA]
¢þ
>WENV182828024
OKDE01001618
[OKDE] human gut metagenome; human gut
1102
1012
-
Ser
TGA
[ENA]
¢þ
>WENV182832912
OKEP01001151
[OKEP] human gut metagenome; human gut
2542
2632
+
Ser
TGA
[ENA]
¢þ
>WENV182838026
OKGN01005619
[OKGN] human gut metagenome; human gut
145
235
+
Ser
TGA
[ENA]
¢þ
>WENV182840200
OKHK01001250
[OKHK] human gut metagenome; human gut
457
547
+
Ser
TGA
[ENA]
¢þ
>WENV182842688
OKIF01000968
[OKIF] human gut metagenome; human gut
1071
981
-
Ser
TGA
[ENA]
¢þ
>WENV182844336
OKIR01002032
[OKIR] human gut metagenome; human gut
1736
1826
+
Ser
TGA
[ENA]
¢þ
>WENV182845000
OKIY01003088
[OKIY] human gut metagenome; human gut
464
374
-
Ser
TGA
[ENA]
¢þ
>WENV182855782
OKNE01000711
[OKNE] human gut metagenome; human gut
1736
1826
+
Ser
TGA
[ENA]
¢þ
>WENV182856649
OKNP01000680
[OKNP] human gut metagenome; human gut
2601
2691
+
Ser
TGA
[ENA]
¢þ
>WENV182865036
OKQH01000514
[OKQH] human gut metagenome; human gut
1312
1222
-
Ser
TGA
[ENA]
¢þ
>WENV182865638
OKQK01004066
[OKQK] human gut metagenome; human gut
1355
1445
+
Ser
TGA
[ENA]
¢þ
>WENV182946052
OKVK01005022
[OKVK] human gut metagenome; human gut
400
310
-
Ser
TGA
[ENA]
¢þ
>WENV182954837
OKWB01000028
[OKWB] human gut metagenome; stool
4781
4871
+
Ser
TGA
[ENA]
¢þ
>WENV182954838
OKWB01000028
[OKWB] human gut metagenome; stool
5859
5949
+
Ser
TGA
[ENA]
¢þ
>WENV182958898
OKWI01000037
[OKWI] human gut metagenome; stool
166784
166694
-
Ser
TGA
[ENA]
¢þ
>WENV182958899
OKWI01000037
[OKWI] human gut metagenome; stool
165706
165616
-
Ser
TGA
[ENA]
¢þ
>WENV182960934
OKWK01000060
[OKWK] human gut metagenome; stool
7029
7119
+
Ser
TGA
[ENA]
¢þ
>WENV182960935
OKWK01000060
[OKWK] human gut metagenome; stool
8108
8198
+
Ser
TGA
[ENA]
¢þ
>WENV182961667
OKWL01000139
[OKWL] human gut metagenome; stool
4785
4875
+
Ser
TGA
[ENA]
¢þ
>WENV182961668
OKWL01000139
[OKWL] human gut metagenome; stool
5863
5953
+
Ser
TGA
[ENA]
¢þ
>WENV182962306
OKWN01000181
[OKWN] human gut metagenome; stool
45001
44911
-
Ser
TGA
[ENA]
¢þ
>WENV182962307
OKWN01000181
[OKWN] human gut metagenome; stool
43923
43833
-
Ser
TGA
[ENA]
¢þ
>WENV182962671
OKWO01000024
[OKWO] human gut metagenome; stool
166880
166790
-
Ser
TGA
[ENA]
¢þ
>WENV182962672
OKWO01000024
[OKWO] human gut metagenome; stool
165802
165712
-
Ser
TGA
[ENA]
¢þ
>WENV182963275
OKWQ01000047
[OKWQ] human gut metagenome; stool
166515
166425
-
Ser
TGA
[ENA]
¢þ
>WENV182963276
OKWQ01000047
[OKWQ] human gut metagenome; stool
165437
165347
-
Ser
TGA
[ENA]
¢þ
>WENV182965648
OKWT01000023
[OKWT] human gut metagenome; stool
4781
4871
+
Ser
TGA
[ENA]
¢þ
>WENV182965649
OKWT01000023
[OKWT] human gut metagenome; stool
5859
5949
+
Ser
TGA
[ENA]
¢þ
>WENV182967137
OKWZ01000021
[OKWZ] human gut metagenome; stool
166787
166697
-
Ser
TGA
[ENA]
¢þ
>WENV182967138
OKWZ01000021
[OKWZ] human gut metagenome; stool
165709
165619
-
Ser
TGA
[ENA]
¢þ
>WENV183087255
OLJG01000487
[OLJG] human gut metagenome; human gut
1295
1205
-
Ser
TGA
[ENA]
¢þ
>WENV183113038
OLNP01004657
[OLNP] human gut metagenome; faeces
1032
942
-
Ser
TGA
[ENA]
¢þ
>WENV183238332
OLQY01026234
[OLQY] human gut metagenome; faeces
103
13
-
Ser
TGA
[ENA]
¢þ
>WENV170656041
JTFN01120284
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
7
97
+
Ser
TGA
[ENA]
¢þ
>WENV170656208
JTFO01004519
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
327
237
-
Ser
TGA
[ENA]
¢þ
>WENV170687756
LFRM01209235
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
16380
16470
+
Ser
TGA
[ENA]
¢þ
>C181031722
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
27867
27957
+
Ser
TGA
-
¡û
>C181031723
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
28077
28167
+
Ser
TGA
-
¡û
>C181031951
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
27870
27960
+
Ser
TGA
-
¡û
>C181031952
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
28080
28170
+
Ser
TGA
-
¡û
>C191025591
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1769500
1769590
+
Ser
TGA
-
¡û
>C191025592
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1769732
1769822
+
Ser
TGA
-
¡û
>C191051217
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
28280
28370
+
Ser
TGA
-
¡û
>C191051218
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
28490
28580
+
Ser
TGA
-
¡û
>C191123786
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
543593
543683
+
Ser
TGA
-
¡û
>C191123787
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
543825
543915
+
Ser
TGA
-
¡û
>W1911493626
OBIP01000008
Bacillota
Clostridium paraputrificum LH141 [OBIP]
5243
5333
+
Ser
TGA
[ENA]
¡û
>W1911493627
OBIP01000008
Bacillota
Clostridium paraputrificum LH141 [OBIP]
6321
6411
+
Ser
TGA
[ENA]
¡û
>W1911493679
OBIQ01000008
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
5293
5383
+
Ser
TGA
[ENA]
¡û
>W1911493680
OBIQ01000008
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
6372
6462
+
Ser
TGA
[ENA]
¡û
>W1911493877
OBJN01000007
Bacillota
Clostridium paraputrificum LH025 [OBJN]
5218
5308
+
Ser
TGA
[ENA]
¡û
>W1911493878
OBJN01000007
Bacillota
Clostridium paraputrificum LH025 [OBJN]
6295
6385
+
Ser
TGA
[ENA]
¡û
>W1810367599
PVXQ01000027
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
12046
12136
+
Ser
TGA
[ENA]
¡û
>W1810604841
QGMT01000012
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
91872
91782
-
Ser
TGA
[ENA]
¡û
>W1810604842
QGMT01000012
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
90793
90703
-
Ser
TGA
[ENA]
¡û
>W1510755247
CYSO01000012
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
12190
12280
+
Ser
TGA
[ENA]
¡û
>W1610101701
CYZW01000010
Bacillota
Clostridium paraputrificum [CYZW]
143449
143359
-
Ser
TGA
[ENA]
¡û
>W1610101702
CYZW01000010
Bacillota
Clostridium paraputrificum [CYZW]
142372
142282
-
Ser
TGA
[ENA]
¡û
>W1610104333
CZBQ01000008
Bacillota
Clostridium paraputrificum [CZBQ]
166510
166420
-
Ser
TGA
[ENA]
¡û
>W1610104334
CZBQ01000008
Bacillota
Clostridium paraputrificum [CZBQ]
165432
165342
-
Ser
TGA
[ENA]
¡û
>W1610507769
FLTT01000067
Bacillota
Clostridium septicum [FLTT]
707
617
-
Ser
TGA
[ENA]
¡û
>W1610507770
FLTT01000067
Bacillota
Clostridium septicum [FLTT]
475
385
-
Ser
TGA
[ENA]
¡û
>W1611056116
MAPZ01000024
Bacillota
Clostridium paraputrificum [MAPZ]
5216
5306
+
Ser
TGA
[ENA]
¡û
>W1611056117
MAPZ01000024
Bacillota
Clostridium paraputrificum [MAPZ]
6293
6383
+
Ser
TGA
[ENA]
¡û
>WENV084321
BAAZ01012831
Gut microbiome of Human (healthy human sample F2-X, Child, Male)
289
197
-
Ser
TGA
[ENA]
>W1710104456
CYZW01000010
Bacillota
Clostridium paraputrificum [CYZW]
143449
143359
-
Ser
TGA
[ENA]
¡û
>W1710104457
CYZW01000010
Bacillota
Clostridium paraputrificum [CYZW]
142372
142282
-
Ser
TGA
[ENA]
¡û
>W1710107037
CZBQ01000008
Bacillota
Clostridium paraputrificum [CZBQ]
166510
166420
-
Ser
TGA
[ENA]
¡û
>W1710107038
CZBQ01000008
Bacillota
Clostridium paraputrificum [CZBQ]
165432
165342
-
Ser
TGA
[ENA]
¡û
>W1710499987
FLTT01000067
Bacillota
Clostridium septicum [FLTT]
707
617
-
Ser
TGA
[ENA]
¡û
>W1710499988
FLTT01000067
Bacillota
Clostridium septicum [FLTT]
475
385
-
Ser
TGA
[ENA]
¡û
>W1710578899
FPBY01000017
Bacillota
Clostridium sp. DSM 8431 [FPBY]
28981
28891
-
Ser
TGA
[ENA]
¡û
>W1710578900
FPBY01000017
Bacillota
Clostridium sp. DSM 8431 [FPBY]
27906
27816
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK