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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179319 (109 seq.)
>A171003612
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
277606
277532
-
Val
TAC
-
¡û
>A171004377
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1952847
1952772
-
Val
TAC
-
¡û
>A171004508
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
23253
23328
+
Val
TAC
-
¡û
>A171004608
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
883642
883567
-
Val
TAC
-
¡û
>A171004622
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1504228
1504302
+
Val
TAC
-
¡û
>A171004674
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1402688
1402762
+
Val
TAC
-
¡û
>A171004726
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
1376223
1376298
+
Val
TAC
-
¡û
>A171004799
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
2740508
2740434
-
Val
TAC
-
¡û
>A171004831
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
2810451
2810525
+
Val
TAC
-
¡û
>A171004886
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3300869
3300943
+
Val
TAC
-
¡û
>A171004935
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
1242576
1242650
+
Val
TAC
-
¡û
>A171004987
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
1196453
1196527
+
Val
TAC
-
¡û
>A171005039
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
1251461
1251535
+
Val
TAC
-
¡û
>A171005090
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1270166
1270240
+
Val
TAC
-
¡û
>A171005153
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2937070
2937144
+
Val
TAC
-
¡û
>A171005204
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
2652925
2652999
+
Val
TAC
-
¡û
>A171005249
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1488718
1488792
+
Val
TAC
-
¡û
>A171005330
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3260470
3260397
-
Val
TAC
-
¡û
>A171005444
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
888932
888858
-
Val
TAC
-
¡û
>A171005501
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
878973
878899
-
Val
TAC
-
¡û
>A171005534
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
3440222
3440148
-
Val
TAC
-
¡û
>A171005591
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3203293
3203218
-
Val
TAC
-
¡û
>A171005640
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3143608
3143533
-
Val
TAC
-
¡û
>WENV180346341
OBLN01066560
[OBLN] sediment metagenome; sediment
442
516
+
Val
TAC
[ENA]
¢þ
>WENV170008174
AMZC01003635
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
144
69
-
Val
TAC
[ENA]
¢þ
>At1383
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
2228030
2228103
+
Val
TAC
[Ensembl]
¡û
>At1448
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
2625515
2625588
+
Val
TAC
[Ensembl]
¡û
>At1528
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
335960
335887
-
Val
TAC
[Ensembl]
¡û
>WENV170686600
LFRM01153609
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
81562
81487
-
Val
TAC
[ENA]
¢þ
>WENV170719405
LSQX01113396
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7248
7322
+
Val
TAC
[ENA]
¢þ
>WENV170784244
MCHG01000218
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
511
586
+
Val
TAC
[ENA]
¢þ
>WENV170784355
MCHG01001058
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
3692
3617
-
Val
TAC
[ENA]
¢þ
>W1910230905
FPAO01000007
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
112408
112483
+
Val
TAC
[ENA]
¡û
>W1910569230
JJOR01000024
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
418
492
+
Val
TAC
[ENA]
¡û
>W1910569289
JJOS01000027
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
826
900
+
Val
TAC
[ENA]
¡û
>W1910569348
JJOT01000038
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
7576
7650
+
Val
TAC
[ENA]
¡û
>W1910569403
JJOU01000127
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
37760
37686
-
Val
TAC
[ENA]
¡û
>W1910569432
JJOV01000011
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
9171
9097
-
Val
TAC
[ENA]
¡û
>W1910569480
JJOW01000003
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
26837
26763
-
Val
TAC
[ENA]
¡û
>W1910569547
JJOX01000060
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
66912
66838
-
Val
TAC
[ENA]
¡û
>W1910569590
JJOY01000006
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
117474
117548
+
Val
TAC
[ENA]
¡û
>W1910569646
JJOZ01000020
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
66912
66838
-
Val
TAC
[ENA]
¡û
>W1910569714
JJPA01000179
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
3956
3882
-
Val
TAC
[ENA]
¡û
>W1910569741
JJPB01000035
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
850
924
+
Val
TAC
[ENA]
¡û
>W1910569818
JJPC01000104
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
379
454
+
Val
TAC
[ENA]
¡û
>W1910569876
JJPD01000172
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
2322
2248
-
Val
TAC
[ENA]
¡û
>W1910569934
JJPE01000161
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
7207
7133
-
Val
TAC
[ENA]
¡û
>W1910569974
JJPF01000092
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
389
463
+
Val
TAC
[ENA]
¡û
>W1910570007
JJPG01000052
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
403
477
+
Val
TAC
[ENA]
¡û
>W1910570054
JJPH01000038
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
365
439
+
Val
TAC
[ENA]
¡û
>W1910570123
JJPI01000080
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
111895
111821
-
Val
TAC
[ENA]
¡û
>W1910570179
JJPJ01000075
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
375
449
+
Val
TAC
[ENA]
¡û
>W1910570226
JJPK01000091
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
380
454
+
Val
TAC
[ENA]
¡û
>W1910570266
JJPL01000093
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
359
433
+
Val
TAC
[ENA]
¡û
>W1910570331
JJPM01000209
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
6117
6043
-
Val
TAC
[ENA]
¡û
>W1910570349
JJPN01000010
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
376
450
+
Val
TAC
[ENA]
¡û
>W1910570416
JJPO01000082
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
380
454
+
Val
TAC
[ENA]
¡û
>W1910570482
JJPP01000135
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
376
450
+
Val
TAC
[ENA]
¡û
>W1910570497
JJPQ01000002
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
49607
49533
-
Val
TAC
[ENA]
¡û
>W1910570590
JJPR01000129
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
26053
25979
-
Val
TAC
[ENA]
¡û
>W1910570634
JJPS01000189
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
27156
27082
-
Val
TAC
[ENA]
¡û
>W1910570653
JJPT01000024
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
107145
107071
-
Val
TAC
[ENA]
¡û
>W1910570747
JJPU01000209
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
38493
38419
-
Val
TAC
[ENA]
¡û
>W1910570767
JJPV01000036
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
117081
117155
+
Val
TAC
[ENA]
¡û
>W1910570823
JJPW01000048
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
376
450
+
Val
TAC
[ENA]
¡û
>W1910570892
JJPX01000155
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
412
486
+
Val
TAC
[ENA]
¡û
>W1910570944
JJPY01000110
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
418
492
+
Val
TAC
[ENA]
¡û
>W1910570959
JJPZ01000026
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
395
469
+
Val
TAC
[ENA]
¡û
>W1910571035
JJQA01000100
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
13881
13807
-
Val
TAC
[ENA]
¡û
>W1910571053
JJQB01000011
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
69046
68972
-
Val
TAC
[ENA]
¡û
>W1910571112
JJQC01000042
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
92418
92344
-
Val
TAC
[ENA]
¡û
>W1910571198
JJQD01000209
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
264
190
-
Val
TAC
[ENA]
¡û
>W1910571204
JJQE01000024
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
7152
7226
+
Val
TAC
[ENA]
¡û
>W1910571274
JJQF01000053
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
62248
62174
-
Val
TAC
[ENA]
¡û
>W1910571347
JJQG01000148
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
389
463
+
Val
TAC
[ENA]
¡û
>W1910571368
JJQH01000073
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
7213
7139
-
Val
TAC
[ENA]
¡û
>W1910571445
JJQI01000106
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
822
896
+
Val
TAC
[ENA]
¡û
>W1910571475
JJQJ01000093
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
7246
7172
-
Val
TAC
[ENA]
¡û
>W1910571531
JJQK01000122
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
763
689
-
Val
TAC
[ENA]
¡û
>W1910571611
JJQL01000095
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
61340
61266
-
Val
TAC
[ENA]
¡û
>W1910571654
JJQM01000097
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
380
454
+
Val
TAC
[ENA]
¡û
>W1910571706
JJQN01000091
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
820
894
+
Val
TAC
[ENA]
¡û
>W1910571768
JJQO01000272
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
820
894
+
Val
TAC
[ENA]
¡û
>W1910571798
JJQP01000022
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
4658
4584
-
Val
TAC
[ENA]
¡û
>W1910571866
JJQQ01000058
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
22626
22552
-
Val
TAC
[ENA]
¡û
>W1910571900
JJQR01000002
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
867
941
+
Val
TAC
[ENA]
¡û
>W1910571988
JJQS01000095
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
38184
38110
-
Val
TAC
[ENA]
¡û
>W1910572017
JJQT01000072
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
2345
2271
-
Val
TAC
[ENA]
¡û
>W1910572075
JJQU01000114
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
839
913
+
Val
TAC
[ENA]
¡û
>W1910572145
JJQV01000112
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
38163
38089
-
Val
TAC
[ENA]
¡û
>W1910572154
JJQW01000011
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
382
456
+
Val
TAC
[ENA]
¡û
>W1910572224
JJQX01000123
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
2330
2256
-
Val
TAC
[ENA]
¡û
>W1910572280
JJQY01000120
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
29523
29597
+
Val
TAC
[ENA]
¡û
>W1910572311
JJQZ01000065
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
38163
38089
-
Val
TAC
[ENA]
¡û
>W1910572382
JJRA01000101
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
37715
37641
-
Val
TAC
[ENA]
¡û
>W1910572434
JJRB01000119
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
8843
8917
+
Val
TAC
[ENA]
¡û
>W1910572609
JMIY01000005
Euryarchaeota
Candidatus Methanoperedens nitroreducens nitroreducens ANME-2d [JMIY]
187602
187529
-
Val
TAC
[ENA]
¡û
>W1910575063
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3729297
3729223
-
Val
TAC
[ENA]
¡û
>W1910635251
LMVP01000175
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
1947
1874
-
Val
TAC
[ENA]
¡û
>W1910652289
LYOR01000004
Euryarchaeota
Candidatus Syntrophoarchaeum butanivorans [LYOR]
14783
14856
+
Val
GAC
[ENA]
¡û
>W1910652300
LYOS01000001
Euryarchaeota
Candidatus Syntrophoarchaeum caldarius [LYOS]
185
258
+
Val
GAC
[ENA]
¡û
>W1910655377
LZPK01000048
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
1185
1260
+
Val
TAC
[ENA]
¡û
>W1910694810
MDTP02000214
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
1571
1646
+
Val
TAC
[ENA]
¡û
>W1910694813
MDTP02000277
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
2006
1931
-
Val
TAC
[ENA]
¡û
>W1610000051
AAAR03000040
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
15132
15206
+
Val
TAC
[ENA]
¡û
>W1610046905
BBCW01000041
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
24040
23964
-
Val
TAC
[ENA]
¡û
>W1610048593
BBEF01000002
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
87520
87445
-
Val
TAC
[ENA]
¡û
>W1610605103
LFRP01000018
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
81562
81487
-
Val
TAC
[ENA]
¡û
>W1610670237
LKAZ01000027
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
60642
60567
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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