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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180432 (67 seq.)
>W1710808916
LKDZ01000013
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
186379
186463
+
Leu
CAA
[ENA]
¡û
>W1710860145
LMCQ01000020
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
190839
190755
-
Leu
CAA
[ENA]
¡û
>W1710862463
LMEK01000001
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
234017
233933
-
Leu
CAA
[ENA]
¡û
>W1710873404
LMMT01000009
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
140653
140737
+
Leu
CAA
[ENA]
¡û
>W1710873509
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
44800
44716
-
Leu
CAA
[ENA]
¡û
>W1710873761
LMNA01000029
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
41690
41606
-
Leu
CAA
[ENA]
¡û
>W1711123829
LUJJ01000020
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
44340
44256
-
Leu
CAA
[ENA]
¡û
>W1711143340
LVHG01000002
Betaproteobacteria
Variovorax paradoxus [LVHG]
77987
77903
-
Leu
CAA
[ENA]
¡û
>W1711386492
MEFM01000014
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
86554
86638
+
Leu
CAA
[ENA]
¡û
>W1711387470
MEGR01000008
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
86554
86638
+
Leu
CAA
[ENA]
¡û
>W1711506637
MKWO01000046
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
86546
86630
+
Leu
CAA
[ENA]
¡û
>C171091659
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
1607051
1606967
-
Leu
CAA
-
¡û
>W131174643
ARIP01000069
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
26073
25989
-
Leu
CAA
[ENA]
¡û
>W141170128
AXXD01000003
Betaproteobacteria
Variovorax sp. JGI 0001020-D06 [AXXD]
13652
13736
+
Leu
CAA
[ENA]
¡û
>W141170159
AXXG01000044
Betaproteobacteria
Variovorax sp. JGI 0001016-M12 [AXXG]
982
1066
+
Leu
CAA
[ENA]
¡û
>WENV183731213
PJTS01019937
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
387
303
-
Leu
CAA
[ENA]
¢þ
>WENV183735271
PJUA01006843
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
552
636
+
Leu
CAA
[ENA]
¢þ
>WENV183735588
PJUB01000103
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
17775
17859
+
Leu
CAA
[ENA]
¢þ
>WENV183741434
PJUG01000011
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
354161
354245
+
Leu
CAA
[ENA]
¢þ
>WENV183741991
PJUH01000031
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
120402
120486
+
Leu
CAA
[ENA]
¢þ
>WENV170559285
CXWL01117730
[CXWL] groundwater metagenome; biofilm material
5886
5970
+
Leu
CAA
[ENA]
¢þ
>WENV171003298
NNBT01003696
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
3080
3164
+
Leu
CAA
[ENA]
¢þ
>WENV171003634
NNBU01001176
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
6645
6729
+
Leu
CAA
[ENA]
¢þ
>WENV171003701
NNBV01000411
[NNBV] plant metagenome; symbiotic tissue sample KVS11
79634
79550
-
Leu
CAA
[ENA]
¢þ
>C181078474
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
5723414
5723498
+
Leu
CAA
-
¡û
>C181159377
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
2605167
2605251
+
Leu
CAA
-
¡û
>W09119936
ACEE01000027
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
5895
5811
-
Leu
CAA
[ENA]
¡û
>C141002580
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
1489990
1489906
-
Leu
CAA
[Ensembl]
¡û
>C09111129
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
1411866
1411782
-
Leu
CAA
[Ensembl]
¡û
>W1910792829
MRCN01000009
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
5909
5993
+
Leu
CAA
[ENA]
¡û
>W1911496700
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
5768253
5768337
+
Leu
CAA
[ENA]
¡û
>W1911647326
QAJK01000018
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
67010
67094
+
Leu
CAA
[ENA]
¡û
>W1810072237
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
4642162
4642078
-
Leu
CAA
[ENA]
¡û
>W1810072640
PEFL01000001
Betaproteobacteria
Comamonas sp. 26 [PEFL]
937229
937145
-
Leu
CAA
[ENA]
¡û
>W1810192738
PKMT01000007
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
98422
98338
-
Leu
CAA
[ENA]
¡û
>W1810486675
QAYA01000008
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
316602
316686
+
Leu
CAA
[ENA]
¡û
>W1810577508
QEOH01000002
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
591058
591142
+
Leu
CAA
[ENA]
¡û
>W1810672524
QJTM01000002
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
316602
316686
+
Leu
CAA
[ENA]
¡û
>W1810676112
QKLT01000008
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
316602
316686
+
Leu
CAA
[ENA]
¡û
>W1810682461
QKUE01000002
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
316602
316686
+
Leu
CAA
[ENA]
¡û
>W1810759410
QPJK01000001
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
166431
166515
+
Leu
CAA
[ENA]
¡û
>SRA1016088
SRR023846.342990
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
123
+
Leu
CAA
[SRA]
>C11123618
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
1555113
1555029
-
Leu
CAA
[Ensembl]
¡û
>W1511508921
JXQQ01000018
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
8949
8865
-
Leu
CAA
[ENA]
¡û
>W1511554991
JZWI01000009
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
117501
117417
-
Leu
CAA
[ENA]
¡û
>C161073183
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
3022464
3022380
-
Leu
CAA
[Ensembl]
¡û
>W121084953
AKIW01000020
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
38872
38788
-
Leu
CAA
[ENA]
¡û
>W1610072172
BCUS01000094
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
23314
23398
+
Leu
CAA
[ENA]
¡û
>W1610072185
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
1343035
1343119
+
Leu
CAA
[ENA]
¡û
>W1610722491
LMCQ01000020
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
190839
190755
-
Leu
CAA
[ENA]
¡û
>W1610724809
LMEK01000001
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
234017
233933
-
Leu
CAA
[ENA]
¡û
>W1610735750
LMMT01000009
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
140653
140737
+
Leu
CAA
[ENA]
¡û
>W1610735855
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
44800
44716
-
Leu
CAA
[ENA]
¡û
>W1610736107
LMNA01000029
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
41690
41606
-
Leu
CAA
[ENA]
¡û
>W1610954348
LVHG01000002
Betaproteobacteria
Variovorax paradoxus [LVHG]
77987
77903
-
Leu
CAA
[ENA]
¡û
>W1710069374
BCUS01000094
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
23314
23398
+
Leu
CAA
[ENA]
¡û
>W1710069387
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
1343035
1343119
+
Leu
CAA
[ENA]
¡û
>W1710506209
FMUJ01000006
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
145874
145958
+
Leu
CAA
[ENA]
¡û
>W1710512950
FMZU01000015
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
11442
11526
+
Leu
CAA
[ENA]
¡û
>W1710517955
FNDR01000006
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
399439
399523
+
Leu
CAA
[ENA]
¡û
>W1710530013
FNOL01000001
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
412534
412450
-
Leu
CAA
[ENA]
¡û
>W1710531347
FNPM01000001
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
422582
422666
+
Leu
CAA
[ENA]
¡û
>W1710542694
FNZJ01000001
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
806783
806699
-
Leu
CAA
[ENA]
¡û
>W1710554292
FOII01000002
Betaproteobacteria
Variovorax sp. OV084 [FOII]
433395
433479
+
Leu
CAA
[ENA]
¡û
>W1710558133
FOLP01000001
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
806783
806699
-
Leu
CAA
[ENA]
¡û
>W1710572118
FOWL01000002
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
176916
176832
-
Leu
CAA
[ENA]
¡û
>W1710573304
FOXJ01000005
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
364485
364401
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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