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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211758 (76 seq.)
>A171004659
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
407697
407623
-
Val
CAC
-
¡û
>A171004741
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3637297
3637223
-
Val
CAC
-
¡û
>A171004816
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
525017
524943
-
Val
CAC
-
¡û
>A171004869
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
498078
498004
-
Val
CAC
-
¡û
>A171004921
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
523822
523748
-
Val
CAC
-
¡û
>A171004947
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3641758
3641832
+
Val
CAC
-
¡û
>A171004997
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3612610
3612684
+
Val
CAC
-
¡û
>A171005049
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3702323
3702397
+
Val
CAC
-
¡û
>A171005111
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
2694906
2694832
-
Val
CAC
-
¡û
>A171005236
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
352789
352715
-
Val
CAC
-
¡û
>A171005258
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4529496
4529570
+
Val
CAC
-
¡û
>A171005337
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2611632
2611558
-
Val
CAC
-
¡û
>A171005447
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
560345
560271
-
Val
CAC
-
¡û
>A171005504
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
541710
541636
-
Val
CAC
-
¡û
>WENV180277077
OBHV01051773
[OBHV] metagenome; water
100
173
+
Val
CAC
[ENA]
¢þ
>WENV180345424
OBLN01000067
[OBLN] sediment metagenome; sediment
8575
8649
+
Val
CAC
[ENA]
¢þ
>At1408
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
602953
602880
-
Val
CAC
[Ensembl]
¡û
>At1542
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2015265
2015192
-
Val
CAC
[Ensembl]
¡û
>WENV170717177
LSQX01027200
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2782
2856
+
Val
CAC
[ENA]
¢þ
>WENV170722825
LSQX01244681
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4601
4527
-
Val
CAC
[ENA]
¢þ
>WENV170784268
MCHG01000302
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
15108
15034
-
Val
CAC
[ENA]
¢þ
>W1910569265
JJOR01000156
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
38932
39006
+
Val
CAC
[ENA]
¡û
>W1910569279
JJOS01000012
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
167313
167239
-
Val
CAC
[ENA]
¡û
>W1910569351
JJOT01000049
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
2402
2328
-
Val
CAC
[ENA]
¡û
>W1910569380
JJOU01000004
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
20205
20279
+
Val
CAC
[ENA]
¡û
>W1910569504
JJOW01000186
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
11859
11785
-
Val
CAC
[ENA]
¡û
>W1910569574
JJOX01000085
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
26828
26754
-
Val
CAC
[ENA]
¡û
>W1910569601
JJOY01000023
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
209845
209771
-
Val
CAC
[ENA]
¡û
>W1910569642
JJOZ01000016
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
209855
209781
-
Val
CAC
[ENA]
¡û
>W1910569725
JJPA01000217
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
36050
35976
-
Val
CAC
[ENA]
¡û
>W1910569764
JJPB01000090
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
13044
12970
-
Val
CAC
[ENA]
¡û
>W1910569788
JJPC01000022
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
20214
20288
+
Val
CAC
[ENA]
¡û
>W1910569889
JJPD01000208
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
29774
29700
-
Val
CAC
[ENA]
¡û
>W1910569921
JJPE01000123
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
29795
29721
-
Val
CAC
[ENA]
¡û
>W1910569977
JJPF01000107
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
13044
12970
-
Val
CAC
[ENA]
¡û
>W1910570001
JJPG01000039
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
13014
12940
-
Val
CAC
[ENA]
¡û
>W1910570146
JJPJ01000028
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
2402
2328
-
Val
CAC
[ENA]
¡û
>W1910570292
JJPL01000151
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
2396
2322
-
Val
CAC
[ENA]
¡û
>W1910570335
JJPM01000265
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
11551
11625
+
Val
CAC
[ENA]
¡û
>W1910570367
JJPN01000068
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
42828
42754
-
Val
CAC
[ENA]
¡û
>W1910570397
JJPO01000002
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
34124
34050
-
Val
CAC
[ENA]
¡û
>W1910570452
JJPP01000023
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
18920
18994
+
Val
CAC
[ENA]
¡û
>W1910570502
JJPQ01000017
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
30365
30291
-
Val
CAC
[ENA]
¡û
>W1910570582
JJPR01000104
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
20229
20303
+
Val
CAC
[ENA]
¡û
>W1910570626
JJPS01000119
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
22138
22212
+
Val
CAC
[ENA]
¡û
>W1910570648
JJPT01000004
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
16862
16788
-
Val
CAC
[ENA]
¡û
>W1910570762
JJPV01000029
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
18920
18994
+
Val
CAC
[ENA]
¡û
>W1910570814
JJPW01000024
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
3956
3882
-
Val
CAC
[ENA]
¡û
>W1910570866
JJPX01000063
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
29803
29729
-
Val
CAC
[ENA]
¡û
>W1910570949
JJPY01000123
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
29782
29708
-
Val
CAC
[ENA]
¡û
>W1910570966
JJPZ01000031
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
29782
29708
-
Val
CAC
[ENA]
¡û
>W1910571002
JJQA01000006
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
38912
38838
-
Val
CAC
[ENA]
¡û
>W1910571208
JJQE01000032
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
13119
13045
-
Val
CAC
[ENA]
¡û
>W1910571311
JJQG01000051
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
20229
20303
+
Val
CAC
[ENA]
¡û
>W1910571358
JJQH01000007
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
36078
36004
-
Val
CAC
[ENA]
¡û
>W1910571415
JJQI01000016
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
20229
20303
+
Val
CAC
[ENA]
¡û
>W1910571462
JJQJ01000028
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
36114
36040
-
Val
CAC
[ENA]
¡û
>W1910571560
JJQK01000276
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
13033
12959
-
Val
CAC
[ENA]
¡û
>W1910571600
JJQL01000079
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
224985
224911
-
Val
CAC
[ENA]
¡û
>W1910571664
JJQM01000133
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
36385
36311
-
Val
CAC
[ENA]
¡û
>W1910571738
JJQN01000172
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
5749
5823
+
Val
CAC
[ENA]
¡û
>W1910571745
JJQO01000033
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
16781
16707
-
Val
CAC
[ENA]
¡û
>W1910571838
JJQP01000234
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
9817
9743
-
Val
CAC
[ENA]
¡û
>W1910571890
JJQQ01000169
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
9485
9559
+
Val
CAC
[ENA]
¡û
>W1910571902
JJQR01000003
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
20289
20363
+
Val
CAC
[ENA]
¡û
>W1910571973
JJQS01000055
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
36365
36291
-
Val
CAC
[ENA]
¡û
>W1910572006
JJQT01000014
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
36066
35992
-
Val
CAC
[ENA]
¡û
>W1910572103
JJQV01000003
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
36102
36028
-
Val
CAC
[ENA]
¡û
>W1910572164
JJQW01000029
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
130293
130367
+
Val
CAC
[ENA]
¡û
>W1910572242
JJQX01000252
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
36102
36028
-
Val
CAC
[ENA]
¡û
>W1910572259
JJQY01000048
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
82805
82731
-
Val
CAC
[ENA]
¡û
>W1910572299
JJQZ01000021
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
36054
35980
-
Val
CAC
[ENA]
¡û
>W1910572394
JJRA01000140
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
36386
36312
-
Val
CAC
[ENA]
¡û
>W1910572428
JJRB01000106
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
36385
36311
-
Val
CAC
[ENA]
¡û
>W1910575071
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1342521
1342447
-
Val
CAC
[ENA]
¡û
>W1910694798
MDTP02000110
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
15108
15034
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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