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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254348 (19 seq.)
>W131169205
AREO01000005
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
138537
138462
-
Thr
TGT
[ENA]
¡û
>W131169211
AREO01000005
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
134309
134234
-
Thr
TGT
[ENA]
¡û
>C171057450
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
1629828
1629903
+
Thr
TGT
-
¡û
>C171057456
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
1633340
1633415
+
Thr
TGT
-
¡û
>WENV170689005
LFRM01271536
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
494
419
-
Thr
TGT
[ENA]
¢þ
>WENV170691134
LFRM01381629
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
86
161
+
Thr
TGT
[ENA]
¢þ
>W09127990
ACLK01000016
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
57241
57316
+
Thr
TGT
[ENA]
¡û
>W09127996
ACLK01000016
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
60752
60827
+
Thr
TGT
[ENA]
¡û
>C191122091
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
1654906
1654981
+
Thr
TGT
-
¡û
>C191122094
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
1659409
1659484
+
Thr
TGT
-
¡û
>C191211058
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
905782
905707
-
Thr
TGT
-
¡û
>C191211064
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
902271
902196
-
Thr
TGT
-
¡û
>W1911294849
NTSA01000474
Bacillota
Bacillus cereus AFS022169 [NTSA]
8
83
+
Thr
TGT
[ENA]
¡û
>C151007171
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1530525
1530450
-
Thr
TGT
[Ensembl]
¡û
>C151007177
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1527015
1526940
-
Thr
TGT
[Ensembl]
¡û
>C11108896
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
226799
226724
-
Thr
TGT
[Ensembl]
¡û
>C11108902
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
223286
223211
-
Thr
TGT
[Ensembl]
¡û
>C161078641
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
1738748
1738823
+
Thr
TGT
-
¡û
>C161078647
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
1742261
1742336
+
Thr
TGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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