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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275041 (74 seq.)
>A171003612
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
277606
277532
-
Val
TAC
-
¡û
>A171004377
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1952847
1952772
-
Val
TAC
-
¡û
>A171004935
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
1242576
1242650
+
Val
TAC
-
¡û
>A171004987
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
1196453
1196527
+
Val
TAC
-
¡û
>A171005039
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
1251461
1251535
+
Val
TAC
-
¡û
>A171005090
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1270166
1270240
+
Val
TAC
-
¡û
>A171005153
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2937070
2937144
+
Val
TAC
-
¡û
>A171005534
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
3440222
3440148
-
Val
TAC
-
¡û
>A171005591
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3203293
3203218
-
Val
TAC
-
¡û
>A171005640
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3143608
3143533
-
Val
TAC
-
¡û
>WENV180346341
OBLN01066560
[OBLN] sediment metagenome; sediment
442
516
+
Val
TAC
[ENA]
¢þ
>At1448
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
2625515
2625588
+
Val
TAC
[Ensembl]
¡û
>At1528
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
335960
335887
-
Val
TAC
[Ensembl]
¡û
>WENV170719405
LSQX01113396
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7248
7322
+
Val
TAC
[ENA]
¢þ
>W1910569230
JJOR01000024
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
418
492
+
Val
TAC
[ENA]
¡û
>W1910569289
JJOS01000027
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
826
900
+
Val
TAC
[ENA]
¡û
>W1910569348
JJOT01000038
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
7576
7650
+
Val
TAC
[ENA]
¡û
>W1910569403
JJOU01000127
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
37760
37686
-
Val
TAC
[ENA]
¡û
>W1910569714
JJPA01000179
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
3956
3882
-
Val
TAC
[ENA]
¡û
>W1910569741
JJPB01000035
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
850
924
+
Val
TAC
[ENA]
¡û
>W1910569818
JJPC01000104
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
379
454
+
Val
TAC
[ENA]
¡û
>W1910569876
JJPD01000172
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
2322
2248
-
Val
TAC
[ENA]
¡û
>W1910569934
JJPE01000161
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
7207
7133
-
Val
TAC
[ENA]
¡û
>W1910569974
JJPF01000092
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
389
463
+
Val
TAC
[ENA]
¡û
>W1910570007
JJPG01000052
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
403
477
+
Val
TAC
[ENA]
¡û
>W1910570054
JJPH01000038
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
365
439
+
Val
TAC
[ENA]
¡û
>W1910570123
JJPI01000080
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
111895
111821
-
Val
TAC
[ENA]
¡û
>W1910570179
JJPJ01000075
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
375
449
+
Val
TAC
[ENA]
¡û
>W1910570226
JJPK01000091
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
380
454
+
Val
TAC
[ENA]
¡û
>W1910570266
JJPL01000093
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
359
433
+
Val
TAC
[ENA]
¡û
>W1910570331
JJPM01000209
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
6117
6043
-
Val
TAC
[ENA]
¡û
>W1910570349
JJPN01000010
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
376
450
+
Val
TAC
[ENA]
¡û
>W1910570416
JJPO01000082
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
380
454
+
Val
TAC
[ENA]
¡û
>W1910570482
JJPP01000135
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
376
450
+
Val
TAC
[ENA]
¡û
>W1910570497
JJPQ01000002
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
49607
49533
-
Val
TAC
[ENA]
¡û
>W1910570590
JJPR01000129
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
26053
25979
-
Val
TAC
[ENA]
¡û
>W1910570634
JJPS01000189
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
27156
27082
-
Val
TAC
[ENA]
¡û
>W1910570653
JJPT01000024
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
107145
107071
-
Val
TAC
[ENA]
¡û
>W1910570747
JJPU01000209
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
38493
38419
-
Val
TAC
[ENA]
¡û
>W1910570767
JJPV01000036
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
117081
117155
+
Val
TAC
[ENA]
¡û
>W1910570823
JJPW01000048
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
376
450
+
Val
TAC
[ENA]
¡û
>W1910570892
JJPX01000155
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
412
486
+
Val
TAC
[ENA]
¡û
>W1910570944
JJPY01000110
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
418
492
+
Val
TAC
[ENA]
¡û
>W1910570959
JJPZ01000026
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
395
469
+
Val
TAC
[ENA]
¡û
>W1910571035
JJQA01000100
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
13881
13807
-
Val
TAC
[ENA]
¡û
>W1910571053
JJQB01000011
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
69046
68972
-
Val
TAC
[ENA]
¡û
>W1910571112
JJQC01000042
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
92418
92344
-
Val
TAC
[ENA]
¡û
>W1910571198
JJQD01000209
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
264
190
-
Val
TAC
[ENA]
¡û
>W1910571204
JJQE01000024
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
7152
7226
+
Val
TAC
[ENA]
¡û
>W1910571274
JJQF01000053
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
62248
62174
-
Val
TAC
[ENA]
¡û
>W1910571347
JJQG01000148
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
389
463
+
Val
TAC
[ENA]
¡û
>W1910571368
JJQH01000073
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
7213
7139
-
Val
TAC
[ENA]
¡û
>W1910571445
JJQI01000106
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
822
896
+
Val
TAC
[ENA]
¡û
>W1910571475
JJQJ01000093
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
7246
7172
-
Val
TAC
[ENA]
¡û
>W1910571531
JJQK01000122
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
763
689
-
Val
TAC
[ENA]
¡û
>W1910571654
JJQM01000097
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
380
454
+
Val
TAC
[ENA]
¡û
>W1910571706
JJQN01000091
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
820
894
+
Val
TAC
[ENA]
¡û
>W1910571768
JJQO01000272
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
820
894
+
Val
TAC
[ENA]
¡û
>W1910571798
JJQP01000022
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
4658
4584
-
Val
TAC
[ENA]
¡û
>W1910571866
JJQQ01000058
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
22626
22552
-
Val
TAC
[ENA]
¡û
>W1910571900
JJQR01000002
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
867
941
+
Val
TAC
[ENA]
¡û
>W1910571988
JJQS01000095
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
38184
38110
-
Val
TAC
[ENA]
¡û
>W1910572017
JJQT01000072
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
2345
2271
-
Val
TAC
[ENA]
¡û
>W1910572075
JJQU01000114
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
839
913
+
Val
TAC
[ENA]
¡û
>W1910572145
JJQV01000112
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
38163
38089
-
Val
TAC
[ENA]
¡û
>W1910572154
JJQW01000011
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
382
456
+
Val
TAC
[ENA]
¡û
>W1910572224
JJQX01000123
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
2330
2256
-
Val
TAC
[ENA]
¡û
>W1910572311
JJQZ01000065
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
38163
38089
-
Val
TAC
[ENA]
¡û
>W1910572382
JJRA01000101
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
37715
37641
-
Val
TAC
[ENA]
¡û
>W1910572434
JJRB01000119
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
8843
8917
+
Val
TAC
[ENA]
¡û
>W1910575063
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3729297
3729223
-
Val
TAC
[ENA]
¡û
>W1910655377
LZPK01000048
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
1185
1260
+
Val
TAC
[ENA]
¡û
>W1610000051
AAAR03000040
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
15132
15206
+
Val
TAC
[ENA]
¡û
>W1610048593
BBEF01000002
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
87520
87445
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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