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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280912 (89 seq.)
>W1711509643
MKZT01000009
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [MKZT]
7
82
+
Ala
TGC
[ENA]
¡û
>W1711630125
MPPZ01000002
Gammaproteobacteria
Solemya velum gill symbiont [MPPZ]
104672
104747
+
Ala
TGC
[ENA]
¡û
>W1711631180
MPRA01000010
Gammaproteobacteria
Solemya velum gill symbiont [MPRA]
38131
38056
-
Ala
TGC
[ENA]
¡û
>W1711631796
MPRQ01000001
Gammaproteobacteria
Solemya velum gill symbiont [MPRQ]
43200
43275
+
Ala
TGC
[ENA]
¡û
>W1711632005
MPRV01000010
Gammaproteobacteria
Solemya velum gill symbiont [MPRV]
19517
19592
+
Ala
TGC
[ENA]
¡û
>WENV180057852
MPLX02025174
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
3059
3134
+
Ala
TGC
[ENA]
¢þ
>WENV180065721
MPLY02082633
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
3258
3183
-
Ala
TGC
[ENA]
¢þ
>WENV180070472
MPLZ02169423
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
1631
1706
+
Ala
TGC
[ENA]
¢þ
>WENV180077777
MPMB02068992
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
235
310
+
Ala
TGC
[ENA]
¢þ
>WENV180095042
MTBK01045110
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
133
208
+
Ala
TGC
[ENA]
¢þ
>WENV181367280
OFPZ01000016
[OFPZ] freshwater metagenome; Freshwater Lake
4083
4008
-
Ala
TGC
[ENA]
¢þ
>WENV183799413
PVBE010504781
[PVBE] marine metagenome; water
472
397
-
Ala
TGC
[ENA]
¢þ
>WENV170024231
BCQL01031780
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
278
353
+
Ala
TGC
[ENA]
¢þ
>WENV170621461
FUWD013060227
[FUWD] metagenome; unknown
820
895
+
Ala
TGC
[ENA]
¢þ
>WENV170629643
FUWD013276461
[FUWD] metagenome; unknown
820
895
+
Ala
TGC
[ENA]
¢þ
>WENV170689309
LFRM01288383
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
310
385
+
Ala
TGC
[ENA]
¢þ
>WENV170691065
LFRM01378376
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
328
403
+
Ala
TGC
[ENA]
¢þ
>WENV170719454
LSQX01115316
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
891
816
-
Ala
TGC
[ENA]
¢þ
>WENV170724911
LSQX01323413
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
551
626
+
Ala
TGC
[ENA]
¢þ
>WENV170751311
LUMI01000369
[LUMI] marine metagenome; Red Sea water column Station 34 - depth 10m
456
381
-
Ala
TGC
[ENA]
¢þ
>WENV170754833
LUMM01001956
[LUMM] marine metagenome; Red Sea water column Station 22 - depth 50m
1087
1012
-
Ala
TGC
[ENA]
¢þ
>WENV170755668
LUMN01011221
[LUMN] marine metagenome; Red Sea water column Station 22 - depth 25m
173
98
-
Ala
TGC
[ENA]
¢þ
>WENV170947161
MDUS01029424
[MDUS] marine metagenome; 300 m water sample from station 6
638
563
-
Ala
TGC
[ENA]
¢þ
>SRA1009283
SRR020491.178140
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
142
67
-
Ala
TGC
[SRA]
>C151035491
CP008696
Gammaproteobacteria
Pseudomonas chlororaphis PA23 [CP008696]
1699
1774
+
Ala
TGC
[Ensembl]
¡û
>C151035493
CP008696
Gammaproteobacteria
Pseudomonas chlororaphis PA23 [CP008696]
710259
710334
+
Ala
TGC
[Ensembl]
¡û
>C151035517
CP008696
Gammaproteobacteria
Pseudomonas chlororaphis PA23 [CP008696]
6335034
6334959
-
Ala
TGC
[Ensembl]
¡û
>C151035527
CP008696
Gammaproteobacteria
Pseudomonas chlororaphis PA23 [CP008696]
5840379
5840304
-
Ala
TGC
[Ensembl]
¡û
>C151035538
CP008696
Gammaproteobacteria
Pseudomonas chlororaphis PA23 [CP008696]
4681532
4681457
-
Ala
TGC
[Ensembl]
¡û
>C151091909
CP012154
Gammaproteobacteria
Wenzhouxiangella marina KCTC 42284 [CP012154]
242527
242602
+
Ala
TGC
-
¡û
>C151093908
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
411116
411191
+
Ala
TGC
-
¡û
>C151093921
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2045320
2045395
+
Ala
TGC
-
¡û
>C151093929
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2482738
2482813
+
Ala
TGC
-
¡û
>C151093934
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1817243
1817168
-
Ala
TGC
-
¡û
>C151093944
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1122921
1122846
-
Ala
TGC
-
¡û
>C151093961
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
390693
390768
+
Ala
TGC
-
¡û
>C151093988
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1421793
1421718
-
Ala
TGC
-
¡û
>C151093996
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1034532
1034457
-
Ala
TGC
-
¡û
>C151094013
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
839566
839641
+
Ala
TGC
-
¡û
>C151094021
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1239293
1239368
+
Ala
TGC
-
¡û
>C151094027
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1641662
1641737
+
Ala
TGC
-
¡û
>C151094051
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
629074
628999
-
Ala
TGC
-
¡û
>C151094062
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
8112
8037
-
Ala
TGC
-
¡û
>C151094065
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
23991
24066
+
Ala
TGC
-
¡û
>C151094078
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1284988
1285063
+
Ala
TGC
-
¡û
>C151094088
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1951816
1951891
+
Ala
TGC
-
¡û
>C151094101
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
672883
672808
-
Ala
TGC
-
¡û
>C151094126
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1889112
1889187
+
Ala
TGC
-
¡û
>C151094137
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1672101
1672026
-
Ala
TGC
-
¡û
>C151094147
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1078768
1078693
-
Ala
TGC
-
¡û
>C151094154
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
646772
646697
-
Ala
TGC
-
¡û
>C151094164
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
24395
24470
+
Ala
TGC
-
¡û
>C151094184
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
2017404
2017479
+
Ala
TGC
-
¡û
>C151094195
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
1185275
1185200
-
Ala
TGC
-
¡û
>C151094203
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
775809
775734
-
Ala
TGC
-
¡û
>C151094216
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
24023
24098
+
Ala
TGC
-
¡û
>C151094227
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1334762
1334837
+
Ala
TGC
-
¡û
>C151094237
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1985705
1985780
+
Ala
TGC
-
¡û
>C151094248
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1104070
1103995
-
Ala
TGC
-
¡û
>C151094256
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
676320
676245
-
Ala
TGC
-
¡û
>C161041349
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
24950
25025
+
Ala
TGC
[Ensembl]
¡û
>C161041362
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1567372
1567447
+
Ala
TGC
[Ensembl]
¡û
>C161041370
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1973075
1973150
+
Ala
TGC
[Ensembl]
¡û
>C161041380
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1337346
1337271
-
Ala
TGC
[Ensembl]
¡û
>C161041390
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
702431
702356
-
Ala
TGC
[Ensembl]
¡û
>C161073900
CP014544
Gammaproteobacteria
Zhongshania aliphaticivorans SM-2 [CP014544]
475127
475202
+
Ala
TGC
[Ensembl]
¡û
>C161073925
CP014544
Gammaproteobacteria
Zhongshania aliphaticivorans SM-2 [CP014544]
3128096
3128021
-
Ala
TGC
[Ensembl]
¡û
>C161078774
CP014867
Gammaproteobacteria
Pseudomonas chlororaphis [CP014867]
3966051
3966126
+
Ala
TGC
-
¡û
>W1610662227
LJTH01000058
Gammaproteobacteria
Vibrio alginolyticus [LJTH]
254
329
+
Ala
TGC
[ENA]
¡û
>W1610662235
LJTH01000061
Gammaproteobacteria
Vibrio alginolyticus [LJTH]
373
448
+
Ala
TGC
[ENA]
¡û
>W1610662243
LJTH01000073
Gammaproteobacteria
Vibrio alginolyticus [LJTH]
85
160
+
Ala
TGC
[ENA]
¡û
>W1610662244
LJTH01000079
Gammaproteobacteria
Vibrio alginolyticus [LJTH]
525
450
-
Ala
TGC
[ENA]
¡û
>W1610662246
LJTH01000081
Gammaproteobacteria
Vibrio alginolyticus [LJTH]
405
480
+
Ala
TGC
[ENA]
¡û
>W1610662250
LJTH01000085
Gammaproteobacteria
Vibrio alginolyticus [LJTH]
528
453
-
Ala
TGC
[ENA]
¡û
>W1610690190
LLEI02000001
Gammaproteobacteria
Vibrio bivalvicida [LLEI]
125
50
-
Ala
TGC
[ENA]
¡û
>W1610759154
LNIO01000035
Gammaproteobacteria
Enterobacter sp. 50858885 [LNIO]
167
92
-
Ala
TGC
[ENA]
¡û
>W1610769640
LNRF01000025
Gammaproteobacteria
Vibrio splendidus [LNRF]
537
612
+
Ala
TGC
[ENA]
¡û
>W1610769647
LNRF01000028
Gammaproteobacteria
Vibrio splendidus [LNRF]
419
494
+
Ala
TGC
[ENA]
¡û
>W1610769662
LNRF01000039
Gammaproteobacteria
Vibrio splendidus [LNRF]
234
309
+
Ala
TGC
[ENA]
¡û
>W1610770164
LNRJ01000035
Gammaproteobacteria
Vibrio sp. CL3 wodanis [LNRJ]
554
479
-
Ala
TGC
[ENA]
¡û
>W1610770170
LNRJ01000037
Gammaproteobacteria
Vibrio sp. CL3 wodanis [LNRJ]
514
439
-
Ala
TGC
[ENA]
¡û
>W1610770506
LNRM01000051
Gammaproteobacteria
Vibrio sp. CL6 wodanis [LNRM]
197
122
-
Ala
TGC
[ENA]
¡û
>W1610770509
LNRM01000052
Gammaproteobacteria
Vibrio sp. CL6 wodanis [LNRM]
169
94
-
Ala
TGC
[ENA]
¡û
>W1610770519
LNRM01000060
Gammaproteobacteria
Vibrio sp. CL6 wodanis [LNRM]
175
250
+
Ala
TGC
[ENA]
¡û
>W1610770521
LNRM01000067
Gammaproteobacteria
Vibrio sp. CL6 wodanis [LNRM]
197
122
-
Ala
TGC
[ENA]
¡û
>W1610838017
LPPQ01000064
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPQ]
207
132
-
Ala
TGC
[ENA]
¡û
>W1610849942
LPZT01000043
Gammaproteobacteria
Vibrio parahaemolyticus [LPZT]
153
228
+
Ala
TGC
[ENA]
¡û
>W1610849946
LPZT01000045
Gammaproteobacteria
Vibrio parahaemolyticus [LPZT]
172
247
+
Ala
TGC
[ENA]
¡û
>W1710660389
JXQD01000016
Gammaproteobacteria
Vibrio sp. qd031 [JXQD]
212
137
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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