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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284135 (20 seq.)
>A171000269
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
1293363
1293436
+
Gly
TCC
-
¡û
>A171002326
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
373312
373386
+
Gly
TCC
-
¡û
>A171002514
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1356347
1356273
-
Gly
TCC
-
¡û
>WENV180277006
OBHV01028218
[OBHV] metagenome; water
28
101
+
Gly
TCC
[ENA]
¢þ
>WENV180287196
OBIK01001432
[OBIK] hydrothermal vent metagenome; sea water
1676
1602
-
Gly
TCC
[ENA]
¢þ
>WENV180316899
OBKJ01001330
[OBKJ] metagenome; hydrothermal vent
2006
2080
+
Gly
TCC
[ENA]
¢þ
>WENV180332362
OBLD01000739
[OBLD] metagenome; water
1976
2050
+
Gly
TCC
[ENA]
¢þ
>WENV180581733
OCMK01056851
[OCMK] metagenome; diffuse fluid
115
189
+
Gly
TCC
[ENA]
¢þ
>WENV181207618
OFAZ01007569
[OFAZ] metagenome; hydrothermal vent
183
109
-
Gly
TCC
[ENA]
¢þ
>WENV181208247
OFBB01001251
[OFBB] metagenome; hydrothermal vent
1121
1047
-
Gly
TCC
[ENA]
¢þ
>WENV181225458
OFDI01002196
[OFDI] metagenome; hydrothermal vent
188
114
-
Gly
TCC
[ENA]
¢þ
>At1049
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
270980
271052
+
Gly
TCC
[Ensembl]
¡û
>At1103
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
537545
537473
-
Gly
TCC
[Ensembl]
¡û
>At1145
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1269029
1268957
-
Gly
TCC
[Ensembl]
¡û
>W1910067447
BFAX01000004
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
318909
318834
-
Gly
TCC
[ENA]
¡û
>W1610000336
AAWI01000003
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
216970
216896
-
Gly
TCC
[ENA]
¡û
>W1610000457
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
451164
451237
+
Gly
TCC
[ENA]
¡û
>W1610000564
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
394135
394208
+
Gly
TCC
[ENA]
¡û
>W1610002123
AEDA01000003
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
110908
110982
+
Gly
TCC
[ENA]
¡û
>W1610018899
AQXV01000053
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
5727
5654
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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