This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287480 (27 seq.)
>W1711222538
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
4092972
4093047
+
Thr
TGT
[ENA]
¡û
>W1711222547
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
2978743
2978668
-
Thr
TGT
[ENA]
¡û
>C007145
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
2593112
2593037
-
Thr
TGT
[Ensembl]
¡û
>WENV181230686
OFEK01002333
[OFEK] activated sludge metagenome; Anaerobic digester
272
197
-
Thr
TGT
[ENA]
¢þ
>WENV181728011
OGQA01013141
[OGQA] human gut metagenome; faeces
1689
1764
+
Thr
TGT
[ENA]
¢þ
>W141251492
CBQO010000096
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
43149
43074
-
Thr
TGT
[ENA]
¡û
>W141251507
CBQO010000133
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
17515
17590
+
Thr
TGT
[ENA]
¡û
>WENV182639695
OJLA01107161
[OJLA] metagenome; faeces
499
574
+
Thr
TGT
[ENA]
¢þ
>WENV183262170
OLRQ01000826
[OLRQ] human gut metagenome; faeces
141
66
-
Thr
TGT
[ENA]
¢þ
>WENV170685547
LFRM01097365
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
89
14
-
Thr
TGT
[ENA]
¢þ
>WENV170686236
LFRM01133544
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
14187
14262
+
Thr
TGT
[ENA]
¢þ
>WENV170686612
LFRM01154766
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23245
23320
+
Thr
TGT
[ENA]
¢þ
>WENV170688897
LFRM01267062
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
76
1
-
Thr
TGT
[ENA]
¢þ
>W09135657
ACVX01000009
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
47706
47781
+
Thr
TGT
[ENA]
¡û
>W141816723
JQKC01000002
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
299489
299414
-
Thr
TGT
[ENA]
¡û
>W141816749
JQKC01000021
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
130497
130572
+
Thr
TGT
[ENA]
¡û
>W1911496619
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
680102
680177
+
Thr
TGT
[ENA]
¡û
>W1911572314
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
732552
732627
+
Thr
TGT
[ENA]
¡û
>W1911572331
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
3327494
3327419
-
Thr
TGT
[ENA]
¡û
>C11106466
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
730127
730202
+
Thr
TGT
[Ensembl]
¡û
>C11106483
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
3334258
3334183
-
Thr
TGT
[Ensembl]
¡û
>C161060775
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
732552
732627
+
Thr
TGT
-
¡û
>C161060792
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
3327494
3327419
-
Thr
TGT
-
¡û
>C161097527
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
733022
733097
+
Thr
TGT
-
¡û
>C161097544
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
3349941
3349866
-
Thr
TGT
-
¡û
>W121061295
AJGS01000038
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
151110
151035
-
Thr
TGT
[ENA]
¡û
>W121061384
AJGT01000050
Bacillota
Acetivibrio thermocellus YS [AJGT]
47234
47309
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK