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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301758 (67 seq.)
>W1710785363
LJHU01000041
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
34956
35031
+
Phe
GAA
[ENA]
¡û
>W1710873847
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
226431
226506
+
Phe
GAA
[ENA]
¡û
>W1710876108
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
110141
110216
+
Phe
GAA
[ENA]
¡û
>W1711407959
MGLI01000125
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
5910
5835
-
Phe
GAA
[ENA]
¡û
>W1711407988
MGLM01000838
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
1620
1695
+
Phe
GAA
[ENA]
¡û
>W1711408008
MGLN01000137
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
2682
2757
+
Phe
GAA
[ENA]
¡û
>W1711501735
MKRY01000209
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
538
613
+
Phe
GAA
[ENA]
¡û
>W1711718128
MTHE01000023
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
6263
6338
+
Phe
GAA
[ENA]
¡û
>W1712106188
NIVP01000018
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
40237
40312
+
Phe
GAA
[ENA]
¡û
>W131052431
AMYY01000011
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
21792
21717
-
Phe
GAA
[ENA]
¡û
>W131218248
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
756323
756248
-
Phe
GAA
[ENA]
¡û
>WENV180015870
FSTO01000190
[FSTO] metagenome; soil
822
747
-
Phe
GAA
[ENA]
¢þ
>W141043023
AMFA01000127
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
17997
17922
-
Phe
GAA
[ENA]
¡û
>WENV181223445
OFDC01016975
[OFDC] hot springs metagenome; Water
710
635
-
Phe
GAA
[ENA]
¢þ
>WENV181227164
OFDN01002613
[OFDN] hot springs metagenome; Water
8975
9050
+
Phe
GAA
[ENA]
¢þ
>WENV181384307
OFRI01000094
[OFRI] wastewater metagenome; Exp Tend VB 90WW
7401
7326
-
Phe
GAA
[ENA]
¢þ
>WENV181384536
OFRI01002328
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2
77
+
Phe
GAA
[ENA]
¢þ
>WENV181384729
OFRI01007306
[OFRI] wastewater metagenome; Exp Tend VB 90WW
75
1
-
Phe
GAA
[ENA]
¢þ
>WENV181402270
OFTY01000400
[OFTY] sludge metagenome; sludge
18623
18548
-
Phe
GAA
[ENA]
¢þ
>W08010823
ABRU01000032
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
7857
7932
+
Phe
GAA
[ENA]
¡û
>WENV183727715
PJTP01000098
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
59042
59117
+
Phe
GAA
[ENA]
¢þ
>WENV183728449
PJTQ01000057
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
18036
17961
-
Phe
GAA
[ENA]
¢þ
>WENV183730943
PJTS01002332
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
801
726
-
Phe
GAA
[ENA]
¢þ
>WENV183733319
PJTY01001013
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
7803
7878
+
Phe
GAA
[ENA]
¢þ
>WENV183735432
PJUB01000004
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
432163
432238
+
Phe
GAA
[ENA]
¢þ
>WENV183739001
PJUE01000853
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
11160
11235
+
Phe
GAA
[ENA]
¢þ
>WENV183740361
PJUF01001424
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
5827
5752
-
Phe
GAA
[ENA]
¢þ
>WENV170193405
CEPH01077910
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
321
396
+
Phe
GAA
[ENA]
¢þ
>WENV170657268
JTFO01114778
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
256
181
-
Phe
GAA
[ENA]
¢þ
>WENV170658947
JUGB01001150
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
2045
1970
-
Phe
GAA
[ENA]
¢þ
>WENV170784066
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
381287
381212
-
Phe
GAA
[ENA]
¢þ
>WENV170838384
MDSZ01166767
[MDSZ] marine metagenome; seawater
92751
92676
-
Phe
GAA
[ENA]
¢þ
>C181056238
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2931143
2931218
+
Phe
GAA
-
¡û
>C191093993
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2071739
2071814
+
Phe
GAA
-
¡û
>C191134424
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1799846
1799921
+
Phe
GAA
-
¡û
>C191157368
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
478032
478107
+
Phe
GAA
-
¡û
>C191166102
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1750549
1750624
+
Phe
GAA
-
¡û
>C191220443
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
2078563
2078488
-
Phe
GAA
-
¡û
>W141551942
JHOF01000026
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
146753
146828
+
Phe
GAA
[ENA]
¡û
>W141712454
JMQR01000094
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
2169
2094
-
Phe
GAA
[ENA]
¡û
>W141731229
JNIX01000009
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
452631
452556
-
Phe
GAA
[ENA]
¡û
>W141819024
JQLZ01000002
Alphaproteobacteria
Caulobacter henricii [JQLZ]
560149
560074
-
Phe
GAA
[ENA]
¡û
>W1910182701
BJNC01000031
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
6456
6531
+
Phe
GAA
[ENA]
¡û
>W1910374326
FUIE01000041
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
2152
2077
-
Phe
GAA
[ENA]
¡û
>W1910725216
MGLJ01000177
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
3529
3454
-
Phe
GAA
[ENA]
¡û
>W1910725292
MGLL01000164
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
2837
2762
-
Phe
GAA
[ENA]
¡û
>W1911566758
PCPB01000018
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
42907
42982
+
Phe
GAA
[ENA]
¡û
>W1911566968
PCPF01000022
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
42912
42987
+
Phe
GAA
[ENA]
¡û
>W1911567208
PCPK01000019
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
42973
43048
+
Phe
GAA
[ENA]
¡û
>W1911567307
PCPM01000025
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
2133
2058
-
Phe
GAA
[ENA]
¡û
>W1911567408
PCPO01000027
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
42888
42963
+
Phe
GAA
[ENA]
¡û
>W1911738136
QUOQ01000002
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
530158
530083
-
Phe
GAA
[ENA]
¡û
>W1911760350
QWTZ01000006
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
17366
17291
-
Phe
GAA
[ENA]
¡û
>W1810693169
QLLC01000020
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
17550
17475
-
Phe
GAA
[ENA]
¡û
>W11123418
ADUI01000075
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
5829
5904
+
Phe
GAA
[ENA]
¡û
>W1511489474
JWSY01000023
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
72078
72153
+
Phe
GAA
[ENA]
¡û
>W1511547888
JZRG01000018
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
225792
225717
-
Phe
GAA
[ENA]
¡û
>W1511596057
LBNT01000008
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
43893
43968
+
Phe
GAA
[ENA]
¡û
>C161047058
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2691543
2691468
-
Phe
GAA
[Ensembl]
¡û
>C161089124
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1458128
1458053
-
Phe
GAA
[Ensembl]
¡û
>W1610074206
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
57625
57550
-
Phe
GAA
[ENA]
¡û
>W1610649169
LJHU01000041
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
34956
35031
+
Phe
GAA
[ENA]
¡û
>W1610736193
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
226431
226506
+
Phe
GAA
[ENA]
¡û
>W1610738454
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
110141
110216
+
Phe
GAA
[ENA]
¡û
>W1710071324
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
57625
57550
-
Phe
GAA
[ENA]
¡û
>W1710084614
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
441676
441601
-
Phe
GAA
[ENA]
¡û
>W1710527029
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
739763
739688
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK