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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320459 (28 seq.)
>W131223533
AUCD01000043
Bacillota
Atopococcus tabaci DSM 17538 [AUCD]
5813
5739
-
Met
CAT
[ENA]
¡û
>C171067228
CP017761
Bacillota
Marinilactibacillus sp. 15R [CP017761]
1404098
1404172
+
Met
CAT
-
¡û
>C171067254
CP017761
Bacillota
Marinilactibacillus sp. 15R [CP017761]
436509
436435
-
Met
CAT
-
¡û
>C171067259
CP017761
Bacillota
Marinilactibacillus sp. 15R [CP017761]
435795
435721
-
Met
CAT
-
¡û
>C171119104
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3309903
3309978
+
Met
CAT
-
¡û
>C171119116
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3316690
3316765
+
Met
CAT
-
¡û
>WENV180042426
LQAE01018454
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
112
187
+
fMet
CAT
[ENA]
¢þ
>WENV180044198
LQAJ01020732
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
356
431
+
fMet
CAT
[ENA]
¢þ
>WENV180278986
OBHX01012403
[OBHX] metagenome; feces
879
954
+
fMet
CAT
[ENA]
¢þ
>WENV180346409
OBLN01088435
[OBLN] sediment metagenome; sediment
358
433
+
fMet
CAT
[ENA]
¢þ
>WENV181686950
OGOX01000016
[OGOX] human gut metagenome; faeces
120487
120412
-
fMet
CAT
[ENA]
¢þ
>WENV183747754
PPCM01030137
[PPCM] marine sediment metagenome; marine sediment
167
92
-
fMet
CAT
[ENA]
¢þ
>WENV170635482
JDSF01031870
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
142
217
+
Met
CAT
[ENA]
¢þ
>WENV170635504
JDSF01036512
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
25
100
+
Met
CAT
[ENA]
¢þ
>WENV170675170
LCWZ01011728
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
770
695
-
Met
CAT
[ENA]
¢þ
>WENV170675205
LCWZ01015868
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
342
417
+
Met
CAT
[ENA]
¢þ
>W1910378010
FUKW01000009
Bacillota
Marinilactibacillus psychrotolerans 42ea [FUKW]
635
709
+
Met
CAT
[ENA]
¡û
>W1910439825
FWDP01000004
Bacillota
Marinilactibacillus piezotolerans Marseille-P2378 [FWDP]
1371
1445
+
Met
CAT
[ENA]
¡û
>W1910548218
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186809
186734
-
Met
CAT
[ENA]
¡û
>W1910548267
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
104
179
+
Met
CAT
[ENA]
¡û
>W1910548287
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
2083
2158
+
Met
CAT
[ENA]
¡û
>W1810889463
QUSM01000002
Bacillota
Anaerofustis stercorihominis AM25-6 [QUSM]
104807
104882
+
Met
CAT
[ENA]
¡û
>W1710512103
FMZD01000042
Bacillota
Marinilactibacillus psychrotolerans [FMZD]
4
78
+
Met
CAT
[ENA]
¡û
>W1710512115
FMZD01000045
Bacillota
Marinilactibacillus psychrotolerans [FMZD]
1740
1666
-
Met
CAT
[ENA]
¡û
>W1710512120
FMZD01000045
Bacillota
Marinilactibacillus psychrotolerans [FMZD]
1112
1038
-
Met
CAT
[ENA]
¡û
>W1710563825
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
759138
759063
-
Met
CAT
[ENA]
¡û
>W1710582295
FQTU01000005
Bacillota
Alkalibacter saccharofermentans DSM 14828 [FQTU]
68500
68425
-
Met
CAT
[ENA]
¡û
>W1710604160
FUZT01000001
Bacillota
Maledivibacter halophilus [FUZT]
28610
28685
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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