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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340261 (39 seq.)
>W1711083812
LSVF01000008
Bacillota
Thermoactinomyces sp. AS95 [LSVF]
37358
37284
-
Asn
GTT
[ENA]
¡û
>WENV170561119
CZCA01003083
[CZCA] anaerobic digester metagenome; anaerobic digester
18185
18111
-
Asn
GTT
[ENA]
¢þ
>WENV170686171
LFRM01129926
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10396
10322
-
Asn
GTT
[ENA]
¢þ
>WENV170691193
LFRM01384180
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
396
322
-
Asn
GTT
[ENA]
¢þ
>WENV170969565
MTKW01032612
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
415
489
+
Asn
GTT
[ENA]
¢þ
>WENV170969963
MTKW01046565
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
906
832
-
Asn
GTT
[ENA]
¢þ
>WENV170970114
MTKW01052723
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3244
3318
+
Asn
GTT
[ENA]
¢þ
>C191151700
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
707686
707612
-
Asn
GTT
-
¡û
>C191151709
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
706937
706863
-
Asn
GTT
-
¡û
>C191151716
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
665975
665901
-
Asn
GTT
-
¡û
>C191171367
CP039710
Bacillota
Thermoactinomyces vulgaris 2H [CP039710]
2588679
2588605
-
Asn
GTT
-
¡û
>C191171399
CP039710
Bacillota
Thermoactinomyces vulgaris 2H [CP039710]
11111
11037
-
Asn
GTT
-
¡û
>C191171408
CP039710
Bacillota
Thermoactinomyces vulgaris 2H [CP039710]
10361
10287
-
Asn
GTT
-
¡û
>W141811993
JPZM01000043
Bacillota
Thermoactinomyces sp. Gus2-1 [JPZM]
1045
1119
+
Asn
GTT
[ENA]
¡û
>W141812005
JPZM01000060
Bacillota
Thermoactinomyces sp. Gus2-1 [JPZM]
6877
6951
+
Asn
GTT
[ENA]
¡û
>W141812030
JPZM01000082
Bacillota
Thermoactinomyces sp. Gus2-1 [JPZM]
67
141
+
Asn
GTT
[ENA]
¡û
>W141812039
JPZM01000082
Bacillota
Thermoactinomyces sp. Gus2-1 [JPZM]
816
890
+
Asn
GTT
[ENA]
¡û
>W1911070692
NMQB01000126
Cyanobacteriota
Fischerella thermalis CCMEE 5273 [NMQB]
549
475
-
Asn
GTT
[ENA]
¡û
>W1911680750
QJKK01000001
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
6515
6441
-
Asn
GTT
[ENA]
¡û
>W1911680792
QJKK01000010
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
109717
109643
-
Asn
GTT
[ENA]
¡û
>W1911680800
QJKK01000010
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
28225
28151
-
Asn
GTT
[ENA]
¡û
>W1810463524
PZZP01000004
Bacillota
Desmospora activa DSM 45169 [PZZP]
67702
67628
-
Asn
GTT
[ENA]
¡û
>W1810504177
QBKR01000014
Bacillota
Melghirimyces profundicolus DSM 45787 [QBKR]
105680
105606
-
Asn
GTT
[ENA]
¡û
>W1511313128
JPST01000023
Bacillota
Thermoactinomyces daqus H-18 [JPST]
521
595
+
Asn
GTT
[ENA]
¡û
>W1511313138
JPST01000052
Bacillota
Thermoactinomyces daqus H-18 [JPST]
20388
20314
-
Asn
GTT
[ENA]
¡û
>W1511313157
JPST01000085
Bacillota
Thermoactinomyces daqus H-18 [JPST]
552
478
-
Asn
GTT
[ENA]
¡û
>W11163426
AFHT01000100
Bacillota
Desmospora sp. 8437 [AFHT]
101
175
+
Asn
GTT
[ENA]
¡û
>W1610605147
LFRQ01000122
Bacillota
Clostridia bacterium DTU022 [LFRQ]
396
322
-
Asn
GTT
[ENA]
¡û
>W1610922565
LSVF01000008
Bacillota
Thermoactinomyces sp. AS95 [LSVF]
37358
37284
-
Asn
GTT
[ENA]
¡û
>W1710511948
FMZA01000012
Bacillota
Melghirimyces thermohalophilus [FMZA]
103369
103295
-
Asn
GTT
[ENA]
¡û
>W1710528955
FNNQ01000014
Bacillota
Marininema mesophilum [FNNQ]
176
250
+
Asn
GTT
[ENA]
¡û
>W1710547044
FOCQ01000010
Bacillota
Lihuaxuella thermophila [FOCQ]
705
779
+
Asn
GTT
[ENA]
¡û
>W1710547059
FOCQ01000010
Bacillota
Lihuaxuella thermophila [FOCQ]
2078
2152
+
Asn
GTT
[ENA]
¡û
>W1710547065
FOCQ01000010
Bacillota
Lihuaxuella thermophila [FOCQ]
80569
80643
+
Asn
GTT
[ENA]
¡û
>W1710566006
FORR01000019
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
71315
71241
-
Asn
GTT
[ENA]
¡û
>W1710566014
FORR01000019
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
22423
22349
-
Asn
GTT
[ENA]
¡û
>W1710576422
FPAA01000010
Bacillota
Marininema halotolerans [FPAA]
205
279
+
Asn
GTT
[ENA]
¡û
>W1710598656
FTOD01000011
Bacillota
Kroppenstedtia eburnea [FTOD]
107902
107828
-
Asn
GTT
[ENA]
¡û
>W1710726467
LFRQ01000122
Bacillota
Clostridia bacterium DTU022 [LFRQ]
396
322
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK