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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411059 (83 seq.)
>C171098291
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
657939
658013
+
Gly
GCC
-
¡û
>C171098294
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
660778
660852
+
Gly
GCC
-
¡û
>C171098296
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
665281
665355
+
Gly
GCC
-
¡û
>C171098332
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2238306
2238232
-
Gly
GCC
-
¡û
>W131160365
AQWN01000002
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
45223
45149
-
Gly
GCC
[ENA]
¡û
>W131187766
ARZA01000092
Bacillota
Caldisalinibacter kiritimatiensis L21-TH-D2 [ARZA]
2
76
+
Gly
GCC
[ENA]
¡û
>W131187770
ARZA01000105
Bacillota
Caldisalinibacter kiritimatiensis L21-TH-D2 [ARZA]
20852
20926
+
Gly
GCC
[ENA]
¡û
>W131220243
ATZF01000004
Bacillota
Shimazuella kribbensis DSM 45090 [ATZF]
259383
259457
+
Gly
GCC
[ENA]
¡û
>W131220248
ATZF01000010
Bacillota
Shimazuella kribbensis DSM 45090 [ATZF]
134446
134372
-
Gly
GCC
[ENA]
¡û
>C008001
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
531492
531566
+
Gly
GCC
[Ensembl]
¡û
>C008004
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
533543
533617
+
Gly
GCC
[Ensembl]
¡û
>C008006
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
534781
534855
+
Gly
GCC
[Ensembl]
¡û
>C008042
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
2375033
2374959
-
Gly
GCC
[Ensembl]
¡û
>WENV180094719
MTBK01026868
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5562
5488
-
Gly
GCC
[ENA]
¢þ
>WENV180097608
MTBK01199734
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1285
1211
-
Gly
GCC
[ENA]
¢þ
>WENV180098215
MTBK01233711
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
7262
7336
+
Gly
GCC
[ENA]
¢þ
>WENV180853257
ODKW01052026
[ODKW] human metagenome; G_DNA_Tongue dorsum
72
146
+
Gly
GCC
[ENA]
¢þ
>WENV180858812
ODLC01034339
[ODLC] human metagenome; G_DNA_Tongue dorsum
518
444
-
Gly
GCC
[ENA]
¢þ
>WENV180925008
ODTK01030548
[ODTK] human metagenome; G_DNA_Supragingival plaque
788
862
+
Gly
GCC
[ENA]
¢þ
>WENV180928446
ODTM01051662
[ODTM] human metagenome; G_DNA_Supragingival plaque
482
408
-
Gly
GCC
[ENA]
¢þ
>WENV180939915
ODTX01134106
[ODTX] human metagenome; G_DNA_Supragingival plaque
205
131
-
Gly
GCC
[ENA]
¢þ
>WENV181059056
ODYL01096628
[ODYL] human metagenome; G_DNA_Tongue dorsum
155
81
-
Gly
GCC
[ENA]
¢þ
>WENV181091877
OEBC01113810
[OEBC] human metagenome; G_DNA_Supragingival plaque
148
74
-
Gly
GCC
[ENA]
¢þ
>WENV181141869
OEGT01028461
[OEGT] human metagenome; G_DNA_Throat
411
485
+
Gly
GCC
[ENA]
¢þ
>WENV181146868
OEHQ01034365
[OEHQ] human metagenome; G_DNA_Supragingival plaque
481
407
-
Gly
GCC
[ENA]
¢þ
>WENV181179813
OEJT01019582
[OEJT] human metagenome; G_DNA_Supragingival plaque
429
355
-
Gly
GCC
[ENA]
¢þ
>WENV181329363
OFLW01005376
[OFLW] metagenome; faeces
438
512
+
Gly
GCC
[ENA]
¢þ
>WENV170561043
CZCA01002500
[CZCA] anaerobic digester metagenome; anaerobic digester
6716
6642
-
Gly
GCC
[ENA]
¢þ
>WENV170561255
CZCA01005317
[CZCA] anaerobic digester metagenome; anaerobic digester
8755
8681
-
Gly
GCC
[ENA]
¢þ
>WENV170562378
CZCB01002356
[CZCB] anaerobic digester metagenome; anaerobic digester
6488
6414
-
Gly
GCC
[ENA]
¢þ
>WENV170562579
CZCB01003685
[CZCB] anaerobic digester metagenome; anaerobic digester
5458
5532
+
Gly
GCC
[ENA]
¢þ
>WENV170563498
CZCB01020089
[CZCB] anaerobic digester metagenome; anaerobic digester
3016
2942
-
Gly
GCC
[ENA]
¢þ
>WENV170643945
JMBV01012433
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
339
265
-
Gly
GCC
[ENA]
¢þ
>WENV170674897
LCWY01019170
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
303
229
-
Gly
GCC
[ENA]
¢þ
>WENV170675348
LCWZ01044650
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
303
229
-
Gly
GCC
[ENA]
¢þ
>WENV170676532
LDZS01000855
[LDZS] terrestrial metagenome; oil reservoir sample K3
1860
1934
+
Gly
GCC
[ENA]
¢þ
>WENV170677653
LDZT01007724
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1641
1715
+
Gly
GCC
[ENA]
¢þ
>WENV170687013
LFRM01173302
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5536
5610
+
Gly
GCC
[ENA]
¢þ
>WENV170687412
LFRM01191882
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
18928
19002
+
Gly
GCC
[ENA]
¢þ
>WENV170688570
LFRM01251252
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
116230
116156
-
Gly
GCC
[ENA]
¢þ
>C181166310
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
1472754
1472828
+
Gly
GCC
-
¡û
>C181166319
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
1576880
1576954
+
Gly
GCC
-
¡û
>C181166336
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2175523
2175597
+
Gly
GCC
-
¡û
>C181166363
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
251337
251263
-
Gly
GCC
-
¡û
>W09135894
BAAC01000003
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
15861
15787
-
Gly
GCC
[ENA]
¡û
>W09135903
BAAC01000065
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
7688
7762
+
Gly
GCC
[ENA]
¡û
>W141817161
JQKL01000017
Bacillota
Thermanaerosceptrum fracticalcis DRI-13 [JQKL]
66994
67068
+
Gly
GCC
[ENA]
¡û
>W141817198
JQKL01000059
Bacillota
Thermanaerosceptrum fracticalcis DRI-13 [JQKL]
821
895
+
Gly
GCC
[ENA]
¡û
>W1810830072
QSLN01000002
Bacillota
Ammonifex thiophilus SR [QSLN]
149342
149268
-
Gly
GCC
[ENA]
¡û
>W10127803
AEES01000047
Bacillota
[Eubacterium] yurii subsp. margaretiae ATCC 43715 [AEES]
10009
9935
-
Gly
GCC
[ENA]
¡û
>C10100342
CP001785
Bacillota
Ammonifex degensii KC4 [CP001785]
189941
190015
+
Gly
GCC
[Ensembl]
¡û
>C11106939
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2551019
2550945
-
Gly
GCC
[Ensembl]
¡û
>C11106942
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2549128
2549054
-
Gly
GCC
[Ensembl]
¡û
>C11106943
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2547924
2547850
-
Gly
GCC
[Ensembl]
¡û
>C11107336
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
1627410
1627484
+
Gly
GCC
[Ensembl]
¡û
>C11107347
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
3472821
3472747
-
Gly
GCC
[Ensembl]
¡û
>C11107350
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
3471568
3471494
-
Gly
GCC
[Ensembl]
¡û
>C11107352
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
3470376
3470302
-
Gly
GCC
[Ensembl]
¡û
>W11135291
AEES01000047
Bacillota
[Eubacterium] yurii subsp. margaretiae ATCC 43715 [AEES]
10009
9935
-
Gly
GCC
[ENA]
¡û
>W11150354
AEVP01000001
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
14038
14112
+
Gly
GCC
[ENA]
¡û
>W11150357
AEVP01000001
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
15929
16003
+
Gly
GCC
[ENA]
¡û
>W11150358
AEVP01000001
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
17133
17207
+
Gly
GCC
[ENA]
¡û
>W121007126
AFZE01000022
Bacillota
Peptoanaerobacter stomatis ACC19a [AFZE]
941
1015
+
Gly
GCC
[ENA]
¡û
>W121007173
AFZF01000013
Bacillota
Peptoanaerobacter stomatis CM2 [AFZF]
66153
66079
-
Gly
GCC
[ENA]
¡û
>W1610073861
BCWE01000004
Bacillota
Desulfolucanica intricata intricatum [BCWE]
85472
85546
+
Gly
GCC
[ENA]
¡û
>W1610073905
BCWE01000026
Bacillota
Desulfolucanica intricata intricatum [BCWE]
9655
9581
-
Gly
GCC
[ENA]
¡û
>W1610073925
BCWE01000066
Bacillota
Desulfolucanica intricata intricatum [BCWE]
258
184
-
Gly
GCC
[ENA]
¡û
>W1610550385
JXLL01000002
Bacillota
Caloranaerobacter sp. TR13 [JXLL]
279613
279687
+
Gly
GCC
[ENA]
¡û
>W1611063137
MBEW01000007
Bacillota
Criibacterium bergeronii CCRI-22567 [MBEW]
24972
24898
-
Gly
GCC
[ENA]
¡û
>W1710070979
BCWE01000004
Bacillota
Desulfolucanica intricata intricatum [BCWE]
85472
85546
+
Gly
GCC
[ENA]
¡û
>W1710071023
BCWE01000026
Bacillota
Desulfolucanica intricata intricatum [BCWE]
9655
9581
-
Gly
GCC
[ENA]
¡û
>W1710071043
BCWE01000066
Bacillota
Desulfolucanica intricata intricatum [BCWE]
258
184
-
Gly
GCC
[ENA]
¡û
>W1710081785
BDGJ01000126
Bacillota
Calderihabitans maritimus [BDGJ]
182
256
+
Gly
GCC
[ENA]
¡û
>W1710083572
BDJK01000055
Bacillota
Carboxydothermus pertinax [BDJK]
167632
167706
+
Gly
GCC
[ENA]
¡û
>W1710083597
BDJL01000019
Bacillota
Carboxydothermus islandicus [BDJL]
66373
66447
+
Gly
GCC
[ENA]
¡û
>W1710083624
BDJL01000141
Bacillota
Carboxydothermus islandicus [BDJL]
20971
21045
+
Gly
GCC
[ENA]
¡û
>W1710528501
FNNG01000016
Bacillota
Tepidimicrobium xylanilyticum [FNNG]
785
859
+
Gly
GCC
[ENA]
¡û
>W1710583553
FQUW01000054
Bacillota
Desulfofundulus australicus DSM 11792 [FQUW]
9956
10030
+
Gly
GCC
[ENA]
¡û
>W1710586456
FQXF01000008
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
71714
71640
-
Gly
GCC
[ENA]
¡û
>W1710586472
FQXF01000016
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
290
216
-
Gly
GCC
[ENA]
¡û
>W1710586488
FQXF01000032
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
1856
1930
+
Gly
GCC
[ENA]
¡û
>W1710586490
FQXF01000032
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
3230
3304
+
Gly
GCC
[ENA]
¡û
>W1710660019
JXLL01000002
Bacillota
Caloranaerobacter sp. TR13 [JXLL]
279613
279687
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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