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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451915 (42 seq.)
>WENV180095042
MTBK01045110
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
133
208
+
Ala
TGC
[ENA]
¢þ
>WENV170024231
BCQL01031780
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
278
353
+
Ala
TGC
[ENA]
¢þ
>WENV170689309
LFRM01288383
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
310
385
+
Ala
TGC
[ENA]
¢þ
>WENV170691065
LFRM01378376
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
328
403
+
Ala
TGC
[ENA]
¢þ
>WENV170719454
LSQX01115316
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
891
816
-
Ala
TGC
[ENA]
¢þ
>WENV170724911
LSQX01323413
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
551
626
+
Ala
TGC
[ENA]
¢þ
>C151093908
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
411116
411191
+
Ala
TGC
-
¡û
>C151093921
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2045320
2045395
+
Ala
TGC
-
¡û
>C151093929
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2482738
2482813
+
Ala
TGC
-
¡û
>C151093934
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1817243
1817168
-
Ala
TGC
-
¡û
>C151093944
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1122921
1122846
-
Ala
TGC
-
¡û
>C151093961
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
390693
390768
+
Ala
TGC
-
¡û
>C151093988
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1421793
1421718
-
Ala
TGC
-
¡û
>C151093996
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1034532
1034457
-
Ala
TGC
-
¡û
>C151094013
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
839566
839641
+
Ala
TGC
-
¡û
>C151094021
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1239293
1239368
+
Ala
TGC
-
¡û
>C151094027
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1641662
1641737
+
Ala
TGC
-
¡û
>C151094051
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
629074
628999
-
Ala
TGC
-
¡û
>C151094062
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
8112
8037
-
Ala
TGC
-
¡û
>C151094065
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
23991
24066
+
Ala
TGC
-
¡û
>C151094078
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1284988
1285063
+
Ala
TGC
-
¡û
>C151094088
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1951816
1951891
+
Ala
TGC
-
¡û
>C151094101
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
672883
672808
-
Ala
TGC
-
¡û
>C151094126
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1889112
1889187
+
Ala
TGC
-
¡û
>C151094137
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1672101
1672026
-
Ala
TGC
-
¡û
>C151094147
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1078768
1078693
-
Ala
TGC
-
¡û
>C151094154
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
646772
646697
-
Ala
TGC
-
¡û
>C151094164
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
24395
24470
+
Ala
TGC
-
¡û
>C151094184
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
2017404
2017479
+
Ala
TGC
-
¡û
>C151094195
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
1185275
1185200
-
Ala
TGC
-
¡û
>C151094203
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
775809
775734
-
Ala
TGC
-
¡û
>C151094216
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
24023
24098
+
Ala
TGC
-
¡û
>C151094227
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1334762
1334837
+
Ala
TGC
-
¡û
>C151094237
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1985705
1985780
+
Ala
TGC
-
¡û
>C151094248
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1104070
1103995
-
Ala
TGC
-
¡û
>C151094256
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
676320
676245
-
Ala
TGC
-
¡û
>C161041349
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
24950
25025
+
Ala
TGC
[Ensembl]
¡û
>C161041362
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1567372
1567447
+
Ala
TGC
[Ensembl]
¡û
>C161041370
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1973075
1973150
+
Ala
TGC
[Ensembl]
¡û
>C161041380
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1337346
1337271
-
Ala
TGC
[Ensembl]
¡û
>C161041390
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
702431
702356
-
Ala
TGC
[Ensembl]
¡û
>W1710660389
JXQD01000016
Gammaproteobacteria
Vibrio sp. qd031 [JXQD]
212
137
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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