This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456300 (100 seq.)
>A171003594
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
3004473
3004401
-
Gln
CTG
-
¡û
>A171004383
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
861705
861633
-
Gln
CTG
-
¡û
>A171004547
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
594525
594453
-
Gln
CTG
-
¡û
>A171004560
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
309319
309391
+
Gln
CTG
-
¡û
>A171004778
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
2550558
2550630
+
Gln
CTG
-
¡û
>A171004829
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
2487369
2487441
+
Gln
CTG
-
¡û
>A171004884
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
2989545
2989617
+
Gln
CTG
-
¡û
>A171004938
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
2106950
2107022
+
Gln
CTG
-
¡û
>A171004990
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
2090901
2090973
+
Gln
CTG
-
¡û
>A171005042
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
2205821
2205893
+
Gln
CTG
-
¡û
>A171005112
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1788865
1788793
-
Gln
CTG
-
¡û
>A171005173
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1661391
1661319
-
Gln
CTG
-
¡û
>A171005226
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
2106084
2106012
-
Gln
CTG
-
¡û
>A171005253
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
2693395
2693467
+
Gln
CTG
-
¡û
>A171005297
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
898200
898272
+
Gln
CTG
-
¡û
>A171005434
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1841742
1841670
-
Gln
CTG
-
¡û
>A171005491
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1808776
1808704
-
Gln
CTG
-
¡û
>A171005538
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1994299
1994227
-
Gln
CTG
-
¡û
>A171005568
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
2257142
2257214
+
Gln
CTG
-
¡û
>A171005653
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
867766
867694
-
Gln
CTG
-
¡û
>WENV170008068
AMZC01001023
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
10100
10028
-
Gln
CTG
[ENA]
¢þ
>At1416
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
2956872
2956800
-
Gln
CTG
[Ensembl]
¡û
>At1453
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
4032947
4033019
+
Gln
CTG
[Ensembl]
¡û
>At1551
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
3555026
3554954
-
Gln
CTG
[Ensembl]
¡û
>WENV170684927
LFRM01064322
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3015
3087
+
Gln
CTG
[ENA]
¢þ
>WENV170723981
LSQX01287837
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
61
133
+
Gln
CTG
[ENA]
¢þ
>WENV170784280
MCHG01000382
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
9265
9337
+
Gln
CTG
[ENA]
¢þ
>W1910230909
FPAO01000008
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
176977
176905
-
Gln
CTG
[ENA]
¡û
>W1910569244
JJOR01000086
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
4359
4431
+
Gln
CTG
[ENA]
¡û
>W1910569306
JJOS01000079
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
14845
14917
+
Gln
CTG
[ENA]
¡û
>W1910569371
JJOT01000107
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
34774
34702
-
Gln
CTG
[ENA]
¡û
>W1910569417
JJOU01000181
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
27577
27505
-
Gln
CTG
[ENA]
¡û
>W1910569451
JJOV01000063
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
54819
54891
+
Gln
CTG
[ENA]
¡û
>W1910569510
JJOW01000211
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
5542
5470
-
Gln
CTG
[ENA]
¡û
>W1910569542
JJOX01000043
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
2274
2346
+
Gln
CTG
[ENA]
¡û
>W1910569627
JJOY01000052
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
41798
41726
-
Gln
CTG
[ENA]
¡û
>W1910569647
JJOZ01000022
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
74950
75022
+
Gln
CTG
[ENA]
¡û
>W1910569683
JJPA01000016
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
105851
105779
-
Gln
CTG
[ENA]
¡û
>W1910569749
JJPB01000075
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
4516
4588
+
Gln
CTG
[ENA]
¡û
>W1910569830
JJPC01000153
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
3468
3540
+
Gln
CTG
[ENA]
¡û
>W1910569858
JJPD01000121
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
49019
48947
-
Gln
CTG
[ENA]
¡û
>W1910569910
JJPE01000068
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
34606
34534
-
Gln
CTG
[ENA]
¡û
>W1910569980
JJPF01000118
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
34606
34534
-
Gln
CTG
[ENA]
¡û
>W1910569998
JJPG01000038
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
33513
33441
-
Gln
CTG
[ENA]
¡û
>W1910570086
JJPH01000130
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
34606
34534
-
Gln
CTG
[ENA]
¡û
>W1910570115
JJPI01000066
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
19026
19098
+
Gln
CTG
[ENA]
¡û
>W1910570171
JJPJ01000060
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
38016
38088
+
Gln
CTG
[ENA]
¡û
>W1910570199
JJPK01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
351605
351677
+
Gln
CTG
[ENA]
¡û
>W1910570249
JJPL01000040
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
14187
14259
+
Gln
CTG
[ENA]
¡û
>W1910570332
JJPM01000247
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
3854
3782
-
Gln
CTG
[ENA]
¡û
>W1910570379
JJPN01000127
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
70688
70616
-
Gln
CTG
[ENA]
¡û
>W1910570411
JJPO01000031
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
33627
33555
-
Gln
CTG
[ENA]
¡û
>W1910570471
JJPP01000077
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
3662
3734
+
Gln
CTG
[ENA]
¡û
>W1910570537
JJPQ01000133
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
70733
70661
-
Gln
CTG
[ENA]
¡û
>W1910570567
JJPR01000076
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
12271
12199
-
Gln
CTG
[ENA]
¡û
>W1910570605
JJPS01000053
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
12271
12199
-
Gln
CTG
[ENA]
¡û
>W1910570650
JJPT01000012
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
5052
4980
-
Gln
CTG
[ENA]
¡û
>W1910570727
JJPU01000133
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
20335
20407
+
Gln
CTG
[ENA]
¡û
>W1910570752
JJPV01000017
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
37867
37939
+
Gln
CTG
[ENA]
¡û
>W1910570835
JJPW01000064
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
19236
19308
+
Gln
CTG
[ENA]
¡û
>W1910570855
JJPX01000026
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
12271
12199
-
Gln
CTG
[ENA]
¡û
>W1910570910
JJPY01000029
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
70693
70621
-
Gln
CTG
[ENA]
¡û
>W1910570986
JJPZ01000129
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
25062
24990
-
Gln
CTG
[ENA]
¡û
>W1910571024
JJQA01000085
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
165202
165130
-
Gln
CTG
[ENA]
¡û
>W1910571085
JJQB01000104
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
68263
68191
-
Gln
CTG
[ENA]
¡û
>W1910571131
JJQC01000085
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
44567
44495
-
Gln
CTG
[ENA]
¡û
>W1910571195
JJQD01000185
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
14825
14753
-
Gln
CTG
[ENA]
¡û
>W1910571212
JJQE01000070
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
34700
34628
-
Gln
CTG
[ENA]
¡û
>W1910571268
JJQF01000040
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
33609
33537
-
Gln
CTG
[ENA]
¡û
>W1910571343
JJQG01000125
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
185095
185023
-
Gln
CTG
[ENA]
¡û
>W1910571362
JJQH01000049
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
5411
5483
+
Gln
CTG
[ENA]
¡û
>W1910571423
JJQI01000038
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
13088
13160
+
Gln
CTG
[ENA]
¡û
>W1910571492
JJQJ01000155
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
6885
6957
+
Gln
CTG
[ENA]
¡û
>W1910571533
JJQK01000145
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
2299
2227
-
Gln
CTG
[ENA]
¡û
>W1910571597
JJQL01000075
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
43382
43454
+
Gln
CTG
[ENA]
¡û
>W1910571660
JJQM01000123
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
5411
5483
+
Gln
CTG
[ENA]
¡û
>W1910571710
JJQN01000116
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
2130
2202
+
Gln
CTG
[ENA]
¡û
>W1910571781
JJQO01000333
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
5411
5483
+
Gln
CTG
[ENA]
¡û
>W1910571813
JJQP01000118
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
4981
4909
-
Gln
CTG
[ENA]
¡û
>W1910571857
JJQQ01000030
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
4848
4920
+
Gln
CTG
[ENA]
¡û
>W1910571937
JJQR01000108
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
5411
5483
+
Gln
CTG
[ENA]
¡û
>W1910571982
JJQS01000072
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
5411
5483
+
Gln
CTG
[ENA]
¡û
>W1910572041
JJQT01000223
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
5411
5483
+
Gln
CTG
[ENA]
¡û
>W1910572090
JJQU01000156
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
3290
3362
+
Gln
CTG
[ENA]
¡û
>W1910572147
JJQV01000143
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
26276
26204
-
Gln
CTG
[ENA]
¡û
>W1910572192
JJQW01000128
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
18297
18225
-
Gln
CTG
[ENA]
¡û
>W1910572209
JJQX01000031
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
8542
8470
-
Gln
CTG
[ENA]
¡û
>W1910572268
JJQY01000091
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
35430
35358
-
Gln
CTG
[ENA]
¡û
>W1910572312
JJQZ01000067
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
5411
5483
+
Gln
CTG
[ENA]
¡û
>W1910572345
JJRA01000009
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
39456
39384
-
Gln
CTG
[ENA]
¡û
>W1910572444
JJRB01000142
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
5269
5341
+
Gln
CTG
[ENA]
¡û
>W1910575049
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
2964393
2964465
+
Gln
CTG
[ENA]
¡û
>W1910635238
LMVP01000056
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
8834
8762
-
Gln
CTG
[ENA]
¡û
>W1910655403
LZPK01000332
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
3588
3516
-
Gln
CTG
[ENA]
¡û
>W1910694802
MDTP02000130
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
9265
9337
+
Gln
CTG
[ENA]
¡û
>W1610000026
AAAR03000007
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
24042
24114
+
Gln
CTG
[ENA]
¡û
>W1610045117
BBBC01000060
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
4309
4381
+
Gln
CTG
[ENA]
¡û
>W1610046918
BBCW01000118
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
3002
3074
+
Gln
CTG
[ENA]
¡û
>W1610605093
LFRP01000014
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
3015
3087
+
Gln
CTG
[ENA]
¡û
>W1610670259
LKAZ01000051
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
12612
12684
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK