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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4686 (80 seq.)
>W1710787525
LJJR01000007
Deinococcota
Thermus scotoductus [LJJR]
110273
110180
-
Ser
GGA
[ENA]
¡û
>C171047192
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
352674
352767
+
Ser
GGA
-
¡û
>W131155631
AQOS01000068
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
1928
2021
+
Ser
GGA
[ENA]
¡û
>W131160740
AQWU01000070
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
68714
68621
-
Ser
GGA
[ENA]
¡û
>W131167511
ARDI01000003
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
327825
327732
-
Ser
GGA
[ENA]
¡û
>W131177900
ARLD01000077
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
47595
47502
-
Ser
GGA
[ENA]
¡û
>W131218086
ATXJ01000003
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
13440
13533
+
Ser
GGA
[ENA]
¡û
>W131231957
AUIW01000006
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
69038
68945
-
Ser
GGA
[ENA]
¡û
>C025912
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
467069
466976
-
Ser
GGA
[Ensembl]
¡û
>C025950
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
795989
795896
-
Ser
GGA
[Ensembl]
¡û
>W141080506
ATNI01000048
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
17147
17240
+
Ser
GGA
[ENA]
¡û
>WENV181228049
OFDN01129832
[OFDN] hot springs metagenome; Water
117
24
-
Ser
GGA
[ENA]
¢þ
>WENV181404527
OGCA01009916
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
690
783
+
Ser
GGA
[ENA]
¢þ
>WENV181404629
OGCB01000005
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
277
184
-
Ser
GGA
[ENA]
¢þ
>WENV181405399
OGCE01000065
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
38167
38260
+
Ser
GGA
[ENA]
¢þ
>WENV181407939
OGCH01000260
[OGCH] hot springs metagenome; hot springs
1599
1506
-
Ser
GGA
[ENA]
¢þ
>W08011565
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
233685
233595
-
Ser
GGA
[ENA]
¡û
>C181003552
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
444032
444125
+
Ser
GGA
-
¡û
>C191159654
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
912201
912294
+
Ser
GGA
-
¡û
>C191189995
LR027517
Deinococcota
Thermus thermophilus [LR027517]
828272
828365
+
Ser
GGA
-
¡û
>W141818235
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
881245
881338
+
Ser
GGA
[ENA]
¡û
>W141818299
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1343814
1343721
-
Ser
GGA
[ENA]
¡û
>W141820352
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1311329
1311422
+
Ser
GGA
[ENA]
¡û
>W141820774
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
352936
352843
-
Ser
GGA
[ENA]
¡û
>W1911578802
PELL01000298
Deinococcota
Thermus scotoductus 39_S39 [PELL]
14049
13956
-
Ser
GGA
[ENA]
¡û
>W1911578843
PELM01000167
Deinococcota
Thermus scotoductus 38_S38 [PELM]
1272
1365
+
Ser
GGA
[ENA]
¡û
>W1911578889
PELN01000105
Deinococcota
Thermus scotoductus 37_S37 [PELN]
1266
1359
+
Ser
GGA
[ENA]
¡û
>W1911578941
PELO01000150
Deinococcota
Thermus scotoductus 35_S35 [PELO]
610
517
-
Ser
GGA
[ENA]
¡û
>W1911578984
PELP01000206
Deinococcota
Thermus scotoductus 34_S34 [PELP]
710
617
-
Ser
GGA
[ENA]
¡û
>W1911579043
PELQ01000147
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
1280
1373
+
Ser
GGA
[ENA]
¡û
>W1911579086
PELR01000233
Deinococcota
Thermus scotoductus 32_S32 [PELR]
2197
2104
-
Ser
GGA
[ENA]
¡û
>W1911579128
PELS01000136
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1280
1373
+
Ser
GGA
[ENA]
¡û
>W1911579186
PELT01000140
Deinococcota
Thermus scotoductus 30_S30 [PELT]
1276
1369
+
Ser
GGA
[ENA]
¡û
>W1911579223
PELU01000131
Deinococcota
Thermus scotoductus 29_S29 [PELU]
1266
1359
+
Ser
GGA
[ENA]
¡û
>W1911579275
PELV01000183
Deinococcota
Thermus scotoductus 28_S28 [PELV]
1274
1367
+
Ser
GGA
[ENA]
¡û
>W1911579326
PELW01000170
Deinococcota
Thermus scotoductus 27_S27 [PELW]
1256
1349
+
Ser
GGA
[ENA]
¡û
>W1911579378
PELX01000159
Deinococcota
Thermus scotoductus 26_S26 [PELX]
1266
1359
+
Ser
GGA
[ENA]
¡û
>W1911579413
PELY01000055
Deinococcota
Thermus scotoductus 25_S25 [PELY]
1277
1370
+
Ser
GGA
[ENA]
¡û
>W1911579465
PELZ01000088
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
15812
15905
+
Ser
GGA
[ENA]
¡û
>W1911579507
PEMA01000151
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
1264
1357
+
Ser
GGA
[ENA]
¡û
>W1911579567
PEMB01000309
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
612
519
-
Ser
GGA
[ENA]
¡û
>W1911579611
PEMC01000147
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
613
520
-
Ser
GGA
[ENA]
¡û
>W1911579653
PEMD01000066
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
598
505
-
Ser
GGA
[ENA]
¡û
>W1911579705
PEME01000139
Deinococcota
Thermus scotoductus 19_S19 [PEME]
1272
1365
+
Ser
GGA
[ENA]
¡û
>W1911579755
PEMF01000175
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
1270
1363
+
Ser
GGA
[ENA]
¡û
>W1911579799
PEMG01000166
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
16528
16435
-
Ser
GGA
[ENA]
¡û
>W1911579843
PEMH01000098
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
1264
1357
+
Ser
GGA
[ENA]
¡û
>W1911579889
PEMI01000155
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
2197
2104
-
Ser
GGA
[ENA]
¡û
>W1911579962
PEMJ01000343
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
10906
10999
+
Ser
GGA
[ENA]
¡û
>W1911579987
PEMK01000136
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
1266
1359
+
Ser
GGA
[ENA]
¡û
>W1911580018
PEML01000035
Deinococcota
Thermus scotoductus 12_S12 [PEML]
5028
4935
-
Ser
GGA
[ENA]
¡û
>W1911580135
PEMN01000153
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
610
517
-
Ser
GGA
[ENA]
¡û
>W1911580177
PEMO01000115
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
1282
1375
+
Ser
GGA
[ENA]
¡û
>W1911580226
PEMP01000144
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
17182
17275
+
Ser
GGA
[ENA]
¡û
>W1911580274
PEMQ01000199
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
609
516
-
Ser
GGA
[ENA]
¡û
>W1911580334
PEMR01000130
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
1275
1368
+
Ser
GGA
[ENA]
¡û
>W1911580371
PEMS01000162
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
699
606
-
Ser
GGA
[ENA]
¡û
>W1911580426
PEMT01000146
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
597
504
-
Ser
GGA
[ENA]
¡û
>W1911580470
PEMU01000117
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
598
505
-
Ser
GGA
[ENA]
¡û
>W1911580516
PEMV01000152
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
615
522
-
Ser
GGA
[ENA]
¡û
>W1911580566
PEMW01000196
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
1270
1363
+
Ser
GGA
[ENA]
¡û
>W1810268422
PRDA01000003
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
89663
89756
+
Ser
GGA
[ENA]
¡û
>W1810605095
QGMX01000004
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
141240
141333
+
Ser
GGA
[ENA]
¡û
>W1810889142
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
598225
598318
+
Ser
GGA
[ENA]
¡û
>ENV09004158
ADKJ01000347
Hot springs metagenome ctg_1106445192081
1937
1844
-
Ser
GGA
[ENA]
¡û
>W1511401706
JTJB01000034
Deinococcota
Thermus sp. 2.9 [JTJB]
59683
59590
-
Ser
GGA
[ENA]
¡û
>C11123050
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1517017
1517110
+
Ser
GGA
[Ensembl]
¡û
>C11123203
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
796032
795939
-
Ser
GGA
[Ensembl]
¡û
>C121006399
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1532620
1532713
+
Ser
GGA
[Ensembl]
¡û
>C121009730
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1122289
1122382
+
Ser
GGA
[Ensembl]
¡û
>C161028675
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1515573
1515666
+
Ser
GGA
-
¡û
>C161067092
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1192999
1193092
+
Ser
GGA
[Ensembl]
¡û
>W121056023
AIJQ01000002
Deinococcota
Thermus parvatiensis RL [AIJQ]
4771
4678
-
Ser
GGA
[ENA]
¡û
>W1610045318
BBBL01000125
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
882
975
+
Ser
GGA
[ENA]
¡û
>W1610045415
BBBN01000203
Deinococcota
Thermus sp. JCM 17653 [BBBN]
2410
2317
-
Ser
GGA
[ENA]
¡û
>C131002395
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1424199
1424292
+
Ser
GGA
[Ensembl]
¡û
>W1610651380
LJJR01000007
Deinococcota
Thermus scotoductus [LJJR]
110273
110180
-
Ser
GGA
[ENA]
¡û
>W1710042159
BBBL01000125
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
882
975
+
Ser
GGA
[ENA]
¡û
>W1710042256
BBBN01000203
Deinococcota
Thermus sp. JCM 17653 [BBBN]
2410
2317
-
Ser
GGA
[ENA]
¡û
>W1710514636
FNBC01000003
Deinococcota
Thermus arciformis [FNBC]
72258
72165
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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