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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50263 (12 seq.)
>A171002955
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1385374
1385287
-
Ser
TGA
-
¡û
>A17A000762
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1829853
1829752
-
Ser
CGA
-
¡û
>A17A000811
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
2189671
2189780
+
Ser
CGA
-
¡û
>A179000034
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1744634
1744533
-
Ser
CGA
-
¡û
>A179000316
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1829853
1829752
-
Ser
CGA
-
¡û
>A17A000083
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1744634
1744536
-
Ser
CGA
-
¡û
>WENV170574122
FLYM01007773
[FLYM] hot springs metagenome; Sediment
85
1
-
Ser
TGA
[ENA]
¢þ
>WENV170574352
FLYM01028230
[FLYM] hot springs metagenome; Sediment
478
564
+
Ser
CGA
[ENA]
¢þ
>W1911075112
NMUE01000009
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
49694
49607
-
Ser
TGA
[ENA]
¡û
>W1911075125
NMUE01000041
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
2681
2767
+
Ser
CGA
[ENA]
¡û
>W1911075142
NMUF01000017
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
2112
2025
-
Ser
TGA
[ENA]
¡û
>W1911075154
NMUF01000071
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
674
760
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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