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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59292 (35 seq.)
>A171000085
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
559074
559158
+
Leu
GAG
-
¡û
>A171000894
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
952266
952350
+
Leu
GAG
-
¡û
>A171002273
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
589414
589330
-
Leu
GAG
-
¡û
>A171004007
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2016047
2015963
-
Leu
GAG
-
¡û
>A171006569
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1158620
1158536
-
Leu
GAG
-
¡û
>A171007307
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
304677
304761
+
Leu
GAG
-
¡û
>A171007384
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
157683
157599
-
Leu
GAG
-
¡û
>A171007392
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
402227
402311
+
Leu
GAG
-
¡û
>A171007685
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
540485
540401
-
Leu
GAG
-
¡û
>A171007697
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
948579
948663
+
Leu
GAG
-
¡û
>WENV180003578
FLNZ01006662
[FLNZ] bioreactor metagenome; Moose rumen
334
248
-
Leu
GAG
[ENA]
¢þ
>WENV180037197
FVAA010720644
[FVAA] soil metagenome; Soil
656
740
+
Leu
GAG
[ENA]
¢þ
>WENV180315324
OBKH01067195
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
334
418
+
Leu
GAG
[ENA]
¢þ
>WENV181229633
OFEK01000013
[OFEK] activated sludge metagenome; Anaerobic digester
172592
172676
+
Leu
GAG
[ENA]
¢þ
>WENV181229799
OFEK01000069
[OFEK] activated sludge metagenome; Anaerobic digester
27704
27788
+
Leu
GAG
[ENA]
¢þ
>WENV170021539
BBPF01023261
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
103
189
+
Leu
GAG
[ENA]
¢þ
>At1648
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
568080
568163
+
Leu
GAG
[Ensembl]
¡û
>WENV170660371
JXWT01085889
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
334
418
+
Leu
GAG
[ENA]
¢þ
>WENV170671950
LAHU01237914
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
540
456
-
Leu
GAG
[ENA]
¢þ
>WENV170676686
LDZS01001903
[LDZS] terrestrial metagenome; oil reservoir sample K3
12953
12869
-
Leu
GAG
[ENA]
¢þ
>WENV170677331
LDZT01005029
[LDZT] terrestrial metagenome; oil reservoir sample SB1
5703
5787
+
Leu
GAG
[ENA]
¢þ
>WENV170678286
LDZT01013093
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2393
2309
-
Leu
GAG
[ENA]
¢þ
>WENV170688914
LFRM01268296
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
121
35
-
Leu
GAG
[ENA]
¢þ
>WENV170717344
LSQX01032445
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1241
1155
-
Leu
GAG
[ENA]
¢þ
>WENV170978971
MTKZ01069605
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1813
1729
-
Leu
GAG
[ENA]
¢þ
>W1910574927
JQJK01000011
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
102894
102811
-
Leu
GAG
[ENA]
¡û
>W1910574958
JQKN01000003
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
143371
143288
-
Leu
GAG
[ENA]
¡û
>W1910635118
LMVM01000001
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
673239
673155
-
Leu
GAG
[ENA]
¡û
>W1910655438
LZPM01000005
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
34676
34760
+
Leu
GAG
[ENA]
¡û
>W1911690467
QLOE01000010
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
53306
53391
+
Leu
GAG
[ENA]
¡û
>W1911722787
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
668663
668579
-
Leu
GAG
[ENA]
¡û
>W1610006222
AMGN01000004
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
15460
15544
+
Leu
GAG
[ENA]
¡û
>W1610011013
AMPO01000003
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
198439
198523
+
Leu
GAG
[ENA]
¡û
>W1610049160
BBES01000009
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
8621
8537
-
Leu
GAG
[ENA]
¡û
>W1610613885
LGGL01000136
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
5703
5787
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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