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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60569 (16 seq.)
>A171000084
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
17508
17595
+
Ser
GGA
-
¡û
>A171000099
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
950856
950942
+
Ser
GGA
-
¡û
>A171000893
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
482897
482984
+
Ser
GGA
-
¡û
>A171007696
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
433485
433572
+
Ser
GGA
-
¡û
>A171007711
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1339036
1339122
+
Ser
GGA
-
¡û
>WENV180037792
FVAA011731733
[FVAA] soil metagenome; Soil
140
226
+
Ser
GGA
[ENA]
¢þ
>WENV181416898
OGCL01177004
[OGCL] hot springs metagenome; Hot spring water
334
247
-
Ser
GGA
[ENA]
¢þ
>At1646
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
17473
17557
+
Ser
GGA
[Ensembl]
¡û
>At1662
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
968102
968186
+
Ser
GGA
[Ensembl]
¡û
>WENV170651466
JRYF01021346
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
240
154
-
Ser
GGA
[ENA]
¢þ
>WENV170676490
LDZS01000100
[LDZS] terrestrial metagenome; oil reservoir sample K3
122
208
+
Ser
GGA
[ENA]
¢þ
>WENV170676692
LDZS01001916
[LDZS] terrestrial metagenome; oil reservoir sample K3
124
211
+
Ser
GGA
[ENA]
¢þ
>WENV170683927
LFRM01010453
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
459
546
+
Ser
GGA
[ENA]
¢þ
>WENV170688133
LFRM01229339
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
908
994
+
Ser
GGA
[ENA]
¢þ
>W1911722801
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
273771
273685
-
Ser
GGA
[ENA]
¡û
>W1911722811
QREL01000003
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
45182
45269
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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