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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780579 (104 seq.)
>W1710861474
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
1031830
1031757
-
Cys
GCA
[ENA]
¡û
>W1710865365
LMGP01000017
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
228922
228995
+
Cys
GCA
[ENA]
¡û
>W1710866640
LMHQ01000003
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
38040
38113
+
Cys
GCA
[ENA]
¡û
>W1710868494
LMJC01000031
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
210909
210982
+
Cys
GCA
[ENA]
¡û
>W1710868693
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
346150
346223
+
Cys
GCA
[ENA]
¡û
>W1710872393
LMLY01000025
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
158265
158192
-
Cys
GCA
[ENA]
¡û
>W1710872450
LMLZ01000021
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
157779
157706
-
Cys
GCA
[ENA]
¡û
>W1710872613
LMMC01000024
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
243300
243227
-
Cys
GCA
[ENA]
¡û
>W1710875988
LMOV01000024
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
352836
352763
-
Cys
GCA
[ENA]
¡û
>W1710877026
LMPT01000019
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
590703
590630
-
Cys
GCA
[ENA]
¡û
>W1711073159
LSIH01000093
Betaproteobacteria
Acidovorax delafieldii [LSIH]
2519
2446
-
Cys
GCA
[ENA]
¡û
>W1711073680
LSIU01000786
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
12153
12226
+
Cys
GCA
[ENA]
¡û
>W1711075831
LSKS01000561
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
105
178
+
Cys
GCA
[ENA]
¡û
>W1711125011
LUKZ01000019
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
57620
57693
+
Cys
GCA
[ENA]
¡û
>W131227119
AUEX01000010
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
24390
24317
-
Cys
GCA
[ENA]
¡û
>W1711384829
MEDK01000190
Betaproteobacteria
Acidovorax sp. SCN 65-108 [MEDK]
4412
4485
+
Cys
GCA
[ENA]
¡û
>W1711384890
MEDM01000225
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
4085
4012
-
Cys
GCA
[ENA]
¡û
>W1711394768
MERR01000014
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
230242
230315
+
Cys
GCA
[ENA]
¡û
>W1711409711
MGPB01000033
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
29323
29250
-
Cys
GCA
[ENA]
¡û
>W1711503015
MKTF01000065
Betaproteobacteria
Burkholderiales bacterium 64-34 [MKTF]
107050
106977
-
Cys
GCA
[ENA]
¡û
>W1712096707
NIAZ01000010
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
77027
76954
-
Cys
GCA
[ENA]
¡û
>C171049718
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
64193
64120
-
Cys
GCA
-
¡û
>C171091686
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
1703562
1703635
+
Cys
GCA
-
¡û
>C171118043
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
1464830
1464903
+
Cys
GCA
-
¡û
>C171118094
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
1455666
1455739
+
Cys
GCA
-
¡û
>C171118171
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
2492556
2492483
-
Cys
GCA
-
¡û
>C171118197
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
1588150
1588223
+
Cys
GCA
-
¡û
>C171120944
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
2515205
2515132
-
Cys
GCA
-
¡û
>WENV180016766
FSVW01001355
[FSVW] metagenome; soil
4100
4027
-
Cys
GCA
[ENA]
¢þ
>WENV180031788
FTJS01069320
[FTJS] metagenome; soil
300
227
-
Cys
GCA
[ENA]
¢þ
>WENV180256918
OBEQ010864916
[OBEQ] groundwater metagenome; groundwater
163
236
+
Cys
GCA
[ENA]
¢þ
>WENV180283693
OBID01001693
[OBID] metagenome; sludge
1261
1188
-
Cys
GCA
[ENA]
¢þ
>WENV180283850
OBID01004396
[OBID] metagenome; sludge
2526
2453
-
Cys
GCA
[ENA]
¢þ
>WENV181170283
OEIV010035283
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
109
182
+
Cys
GCA
[ENA]
¢þ
>WENV181311763
OFJB01011260
[OFJB] sludge metagenome; sludge
328
255
-
Cys
GCA
[ENA]
¢þ
>WENV181311798
OFJB01013197
[OFJB] sludge metagenome; sludge
2112
2039
-
Cys
GCA
[ENA]
¢þ
>WENV181369218
OFQO01012010
[OFQO] freshwater metagenome; Freshwater Lake
339
266
-
Cys
GCA
[ENA]
¢þ
>WENV181385173
OFRI01043722
[OFRI] wastewater metagenome; Exp Tend VB 90WW
675
748
+
Cys
GCA
[ENA]
¢þ
>WENV181414951
OGCL01002446
[OGCL] hot springs metagenome; Hot spring water
11988
12061
+
Cys
GCA
[ENA]
¢þ
>W141142449
AWQR01000031
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
51743
51816
+
Cys
GCA
[ENA]
¡û
>W141278794
JAFU01000004
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
21854
21781
-
Cys
GCA
[ENA]
¡û
>WENV183725628
PJQF01004216
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
307
234
-
Cys
GCA
[ENA]
¢þ
>WENV183743660
PJUJ01015725
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
384
457
+
Cys
GCA
[ENA]
¢þ
>WENV183744912
PJUL01000623
[PJUL] feces metagenome; Chicken feces enriched on filter paper
19418
19491
+
Cys
GCA
[ENA]
¢þ
>WENV183745046
PJUL01001591
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3235
3162
-
Cys
GCA
[ENA]
¢þ
>WENV170011501
APMI01069992
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1484
1557
+
Cys
GCA
[ENA]
¢þ
>WENV170602860
FUWD010270878
[FUWD] metagenome; unknown
88
15
-
Cys
GCA
[ENA]
¢þ
>WENV170705389
LNAO01000032
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4852
4779
-
Cys
GCA
[ENA]
¢þ
>WENV170706397
LNAP01002822
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
38706
38633
-
Cys
GCA
[ENA]
¢þ
>WENV170711677
LNFM01006449
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13085
13012
-
Cys
GCA
[ENA]
¢þ
>C191099873
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
1726576
1726649
+
Cys
GCA
-
¡û
>W09133913
ACQT01000031
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
16539
16466
-
Cys
GCA
[ENA]
¡û
>W1910179205
BJHU01000035
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
370350
370277
-
Cys
GCA
[ENA]
¡û
>W1910699752
MERV01000012
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 [MERV]
76166
76093
-
Cys
GCA
[ENA]
¡û
>W1910699783
MERW01000002
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
3501
3428
-
Cys
GCA
[ENA]
¡û
>W1910699953
MESB01000054
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_65_48 [MESB]
33550
33623
+
Cys
GCA
[ENA]
¡û
>W1910700285
MESJ01000038
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
37152
37079
-
Cys
GCA
[ENA]
¡û
>W1910700387
MESL01000051
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 [MESL]
21099
21172
+
Cys
GCA
[ENA]
¡û
>W1910726031
MGPD01000032
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
548535
548462
-
Cys
GCA
[ENA]
¡û
>W1911114311
NOIG01000004
Betaproteobacteria
Acidovorax kalamii KNDSW-TSA6 [NOIG]
694568
694641
+
Cys
GCA
[ENA]
¡û
>W1911139404
NOXW01000021
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
507269
507342
+
Cys
GCA
[ENA]
¡û
>W1911647693
QAJR01000015
Betaproteobacteria
Acidovorax sp. FJL06 [QAJR]
49461
49534
+
Cys
GCA
[ENA]
¡û
>W1911768533
QXGR01000005
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
284679
284606
-
Cys
GCA
[ENA]
¡û
>W1911770728
QXJC01000001
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
969136
969063
-
Cys
GCA
[ENA]
¡û
>SRA1001766
SRR001308.41882
Metagenomic characterization of a wastewater treatment plant (SRP000180)
106
179
+
Cys
GCA
[SRA]
>SRA1001960
SRR001308.149161
Metagenomic characterization of a wastewater treatment plant (SRP000180)
77
150
+
Cys
GCA
[SRA]
>W1810071635
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
1477721
1477648
-
Cys
GCA
[ENA]
¡û
>W1810072500
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
2196020
2195947
-
Cys
GCA
[ENA]
¡û
>SRA1002311
SRR001308.369796
Metagenomic characterization of a wastewater treatment plant (SRP000180)
113
40
-
Cys
GCA
[SRA]
>W1810089243
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
3342732
3342659
-
Cys
GCA
[ENA]
¡û
>W1810305905
PTQY01000002
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
164641
164714
+
Cys
GCA
[ENA]
¡û
>W1810474416
QAIH01000034
Betaproteobacteria
Acidovorax sp. HMWF029 [QAIH]
5059
4986
-
Cys
GCA
[ENA]
¡û
>W1810474708
QAIM01000595
Betaproteobacteria
Acidovorax sp. HMWF018 [QAIM]
19711
19638
-
Cys
GCA
[ENA]
¡û
>W1810513797
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
1005283
1005356
+
Cys
GCA
[ENA]
¡û
>W1810573073
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
545094
545167
+
Cys
GCA
[ENA]
¡û
>W1810573548
QEKU01000001
Betaproteobacteria
Acidovorax sp. 99 [QEKU]
389805
389732
-
Cys
GCA
[ENA]
¡û
>W1810683052
QKVP01000005
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
226549
226622
+
Cys
GCA
[ENA]
¡û
>W1810697082
QLTU01000013
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
91310
91237
-
Cys
GCA
[ENA]
¡û
>W1810750711
QOZT01000098
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
1219
1146
-
Cys
GCA
[ENA]
¡û
>W1810884737
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
889349
889422
+
Cys
GCA
[ENA]
¡û
>W1511518956
JXYQ01000082
Betaproteobacteria
Acidovorax temperans KY4 [JXYQ]
31566
31639
+
Cys
GCA
[ENA]
¡û
>W11156538
AFBG01000018
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
339956
340029
+
Cys
GCA
[ENA]
¡û
>W11156584
AFBH01000012
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
339923
339996
+
Cys
GCA
[ENA]
¡û
>W121019092
AGTS01000101
Betaproteobacteria
Acidovorax sp. NO-1 [AGTS]
106554
106481
-
Cys
GCA
[ENA]
¡û
>C131008682
CP003872
Betaproteobacteria
Acidovorax sp. KKS102 [CP003872]
3496963
3496890
-
Cys
GCA
[Ensembl]
¡û
>W1610623705
LHUP01000175
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
33655
33728
+
Cys
GCA
[ENA]
¡û
>W1610723820
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
1031830
1031757
-
Cys
GCA
[ENA]
¡û
>W1610727711
LMGP01000017
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
228922
228995
+
Cys
GCA
[ENA]
¡û
>W1610728986
LMHQ01000003
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
38040
38113
+
Cys
GCA
[ENA]
¡û
>W1610730840
LMJC01000031
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
210909
210982
+
Cys
GCA
[ENA]
¡û
>W1610731039
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
346150
346223
+
Cys
GCA
[ENA]
¡û
>W1610734739
LMLY01000025
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
158265
158192
-
Cys
GCA
[ENA]
¡û
>W1610734796
LMLZ01000021
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
157779
157706
-
Cys
GCA
[ENA]
¡û
>W1610734959
LMMC01000024
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
243300
243227
-
Cys
GCA
[ENA]
¡û
>W1610738334
LMOV01000024
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
352836
352763
-
Cys
GCA
[ENA]
¡û
>W1610739372
LMPT01000019
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
590703
590630
-
Cys
GCA
[ENA]
¡û
>W1610912464
LSIH01000093
Betaproteobacteria
Acidovorax delafieldii [LSIH]
2519
2446
-
Cys
GCA
[ENA]
¡û
>W1610912985
LSIU01000786
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
12153
12226
+
Cys
GCA
[ENA]
¡û
>W1610915136
LSKS01000561
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
105
178
+
Cys
GCA
[ENA]
¡û
>W1610935944
LUKZ01000019
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
57620
57693
+
Cys
GCA
[ENA]
¡û
>W1710532514
FNQJ01000007
Betaproteobacteria
Acidovorax soli [FNQJ]
55549
55622
+
Cys
GCA
[ENA]
¡û
>W1710551524
FOGD01000002
Betaproteobacteria
Giesbergeria anulus [FOGD]
111563
111636
+
Cys
GCA
[ENA]
¡û
>W1710561136
FONX01000011
Betaproteobacteria
Paracidovorax wautersii [FONX]
14401
14474
+
Cys
GCA
[ENA]
¡û
>W1710754795
LHUP01000175
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
33655
33728
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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