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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CTC
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152077 (1 seq.)
>SRA1025727
SRR035085.71705
454 Sequencing (SRP001806)
410
334
-
Glu
CTC
[SRA]
Identical group No.155904 (6 seq.)
>WENV170675861
LDZQ01001147
[LDZQ] terrestrial metagenome; oil reservoir sample I2
49902
49827
-
Glu
CTC
[ENA]
¢þ
>WENV170676571
LDZS01001635
[LDZS] terrestrial metagenome; oil reservoir sample K3
7095
7020
-
Glu
CTC
[ENA]
¢þ
>W1910573188
JONQ01000010
Euryarchaeota
Methermicoccus shengliensis DSM 18856 [JONQ]
62272
62197
-
Glu
CTC
[ENA]
¡û
>SRA1025559
SRR035085.39507
454 Sequencing (SRP001806)
46
120
+
Glu
CTC
[SRA]
>W1610612557
LGEW01000003
Euryarchaeota
Euryarchaeota archaeon 55_53 [LGEW]
49902
49827
-
Glu
CTC
[ENA]
¡û
>W1610613070
LGFK01000008
Euryarchaeota
Methanosarcinales archeaon 56_1174 [LGFK]
7095
7020
-
Glu
CTC
[ENA]
¡û
Identical group No.155958 (1 seq.)
>SRA1026753
SRR035085.280202
454 Sequencing (SRP001806)
424
498
+
Glu
CTC
[SRA]
Identical group No.177279 (4 seq.)
>WENV181367886
OFQD01004246
[OFQD] freshwater metagenome; Freshwater Lake
494
569
+
Glu
CTC
[ENA]
¢þ
>WENV181395429
OFSA01000020
[OFSA] freshwater metagenome; Freshwater Lake
9888
9813
-
Glu
CTC
[ENA]
¢þ
>C151014516
CP006913
Unclassified
candidate division SR1 bacterium RAAC1_SR1_1 [CP006913]
1079790
1079715
-
Glu
CTC
-
¡û
>SRA1025447
SRR035085.8591
454 Sequencing (SRP001806)
240
315
+
Glu
CTC
[SRA]
Identical group No.281940 (4 seq.)
>WENV170605048
FUWD010443699
[FUWD] metagenome; unknown
285
360
+
Glu
CTC
[ENA]
¢þ
>SRA1025492
SRR035085.24301
454 Sequencing (SRP001806)
156
231
+
Glu
CTC
[SRA]
>SRA1025495
SRR035085.24960
454 Sequencing (SRP001806)
286
211
-
Glu
CTC
[SRA]
>SRA1047691
SRR035094.21848
454 Sequencing (SRP001815)
373
298
-
Glu
CTC
[SRA]
Identical group No.281969 (7 seq.)
>WENV170621512
FUWD013061883
[FUWD] metagenome; unknown
3106
3179
+
Glu
CTC
[ENA]
¢þ
>WENV170626108
FUWD013213866
[FUWD] metagenome; unknown
3
78
+
Glu
CTC
[ENA]
¢þ
>SRA1017355
SRR035082.125120
454 Sequencing (SRP001803)
146
71
-
Glu
CTC
[SRA]
>SRA1018181
SRR035082.252153
454 Sequencing (SRP001803)
351
278
-
Glu
CTC
[SRA]
>SRA1025618
SRR035085.51299
454 Sequencing (SRP001806)
134
61
-
Glu
CTC
[SRA]
>SRA1040598
SRR035091.121292
454 Sequencing (SRP001812)
110
183
+
Glu
CTC
[SRA]
>SRA1042228
SRR035091.358907
454 Sequencing (SRP001812)
125
52
-
Glu
CTC
[SRA]
Identical group No.282015 (1 seq.)
>SRA1025837
SRR035085.92694
454 Sequencing (SRP001806)
266
191
-
Glu
CTC
[SRA]
Identical group No.282116 (10 seq.)
>WENV170001083
AGBJ01002763
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
342
267
-
Glu
CTC
[ENA]
¢þ
>WENV170622850
FUWD013123681
[FUWD] metagenome; unknown
433
507
+
Glu
CTC
[ENA]
¢þ
>WENV170631068
FUWD013337231
[FUWD] metagenome; unknown
433
507
+
Glu
CTC
[ENA]
¢þ
>SRA1026527
SRR035085.221750
454 Sequencing (SRP001806)
351
276
-
Glu
CTC
[SRA]
>SRA1032556
SRR035088.45416
454 Sequencing (SRP001809)
252
326
+
Glu
CTC
[SRA]
>SRA1032767
SRR035088.98513
454 Sequencing (SRP001809)
91
17
-
Glu
CTC
[SRA]
>SRA1033719
SRR035088.334966
454 Sequencing (SRP001809)
91
17
-
Glu
CTC
[SRA]
>SRA1034857
SRR035089.186121
454 Sequencing (SRP001810)
177
252
+
Glu
CTC
[SRA]
>SRA1035848
SRR035089.387847
454 Sequencing (SRP001810)
132
206
+
Glu
CTC
[SRA]
>SRA1039567
SRR035090.517817
454 Sequencing (SRP001811)
356
430
+
Glu
CTC
[SRA]
Identical group No.399599 (31 seq.)
>W131157526
AQSK01000075
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
2441
2367
-
Glu
CTC
[ENA]
¡û
>W131157623
AQSM01000135
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
4929
5003
+
Glu
CTC
[ENA]
¡û
>W131192117
ASKN01000009
Unclassified
Cloacimonetes bacterium SCGC AAA252-F02 KSB1 bacterium SCGC AAA252-F02 [ASKN]
21810
21736
-
Glu
CTC
[ENA]
¡û
>W131192128
ASKO01000001
Unclassified
Cloacimonetes bacterium SCGC AAA252-M08 KSB1 bacterium SCGC AAA252-M08 [ASKO]
23558
23632
+
Glu
CTC
[ENA]
¡û
>W131192152
ASKP01000007
Unclassified
Cloacimonetes bacterium SCGC AAA252-L05 KSB1 bacterium SCGC AAA252-L05 [ASKP]
3104
3178
+
Glu
CTC
[ENA]
¡û
>W131192184
ASKQ01000091
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
3188
3262
+
Glu
CTC
[ENA]
¡û
>W131192194
ASKR01000012
Unclassified
Cloacimonetes bacterium SCGC AAA255-B16 KSB1 bacterium SCGC AAA255-B16 [ASKR]
1310
1384
+
Glu
CTC
[ENA]
¡û
>W131192205
ASKS01000025
Unclassified
Cloacimonetes bacterium SCGC AAA255-L20 KSB1 bacterium SCGC AAA255-L20 [ASKS]
3170
3244
+
Glu
CTC
[ENA]
¡û
>W131192918
ASNG01000008
Unclassified
Cloacimonetes bacterium SCGC AAA252-O02 KSB1 bacterium SCGC AAA252-O02 [ASNG]
3156
3230
+
Glu
CTC
[ENA]
¡û
>W131192996
ASNI01000062
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
3169
3243
+
Glu
CTC
[ENA]
¡û
>W131193017
ASNJ01000072
Unclassified
Cloacimonetes bacterium SCGC AAA252-N11 KSB1 bacterium SCGC AAA252-N11 [ASNJ]
2464
2390
-
Glu
CTC
[ENA]
¡û
>W131193018
ASNK01000001
Unclassified
Cloacimonetes bacterium SCGC AAA252-E20 KSB1 bacterium SCGC AAA252-E20 [ASNK]
3695
3769
+
Glu
CTC
[ENA]
¡û
>W131193065
ASNM01000055
Unclassified
Cloacimonetes bacterium SCGC AAA252-G08 KSB1 bacterium SCGC AAA252-G08 [ASNM]
3349
3423
+
Glu
CTC
[ENA]
¡û
>W131193101
ASNN01000096
Unclassified
Cloacimonetes bacterium SCGC AAA252-I11 KSB1 bacterium SCGC AAA252-I11 [ASNN]
3097
3171
+
Glu
CTC
[ENA]
¡û
>W131193127
ASNO01000083
Unclassified
Cloacimonetes bacterium SCGC AAA252-I16 KSB1 bacterium SCGC AAA252-I16 [ASNO]
3194
3268
+
Glu
CTC
[ENA]
¡û
>W131193135
ASNQ01000007
Unclassified
Cloacimonetes bacterium SCGC AAA252-K16 KSB1 bacterium SCGC AAA252-K16 [ASNQ]
3039
3113
+
Glu
CTC
[ENA]
¡û
>W131193194
ASNT01000030
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
4938
5012
+
Glu
CTC
[ENA]
¡û
>W141139702
AWNX01000087
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
10592
10518
-
Glu
CTC
[ENA]
¡û
>WENV170625346
FUWD013196409
[FUWD] metagenome; unknown
951
877
-
Glu
CTC
[ENA]
¢þ
>WENV170633586
FUWD013399075
[FUWD] metagenome; unknown
951
877
-
Glu
CTC
[ENA]
¢þ
>SRA1025458
SRR035085.12094
454 Sequencing (SRP001806)
96
170
+
Glu
CTC
[SRA]
>SRA1026072
SRR035085.137507
454 Sequencing (SRP001806)
98
172
+
Glu
CTC
[SRA]
>SRA1026305
SRR035085.182604
454 Sequencing (SRP001806)
182
108
-
Glu
CTC
[SRA]
>SRA1029415
SRR035087.124236
454 Sequencing (SRP001808)
87
161
+
Glu
CTC
[SRA]
>SRA1029438
SRR035087.127046
454 Sequencing (SRP001808)
87
161
+
Glu
CTC
[SRA]
>SRA1029509
SRR035087.139175
454 Sequencing (SRP001808)
87
161
+
Glu
CTC
[SRA]
>SRA1030231
SRR035087.246293
454 Sequencing (SRP001808)
86
160
+
Glu
CTC
[SRA]
>SRA1030667
SRR035087.311397
454 Sequencing (SRP001808)
206
132
-
Glu
CTC
[SRA]
>SRA1034510
SRR035089.111823
454 Sequencing (SRP001810)
409
335
-
Glu
CTC
[SRA]
>SRA1035622
SRR035089.342147
454 Sequencing (SRP001810)
313
387
+
Glu
CTC
[SRA]
>SRA1036200
SRR035089.469024
454 Sequencing (SRP001810)
168
94
-
Glu
CTC
[SRA]
Identical group No.399637 (1 seq.)
>SRA1025752
SRR035085.76541
454 Sequencing (SRP001806)
387
459
+
Glu
CTC
[SRA]
Identical group No.399640 (3 seq.)
>WENV170611842
FUWD012415431
[FUWD] metagenome; unknown
53
127
+
Glu
CTC
[ENA]
¢þ
>SRA1025761
SRR035085.78823
454 Sequencing (SRP001806)
240
314
+
Glu
CTC
[SRA]
>SRA1025968
SRR035085.119426
454 Sequencing (SRP001806)
242
316
+
Glu
CTC
[SRA]
Identical group No.399643 (2 seq.)
>WENV170605251
FUWD010461788
[FUWD] metagenome; unknown
600
528
-
Glu
CTC
[ENA]
¢þ
>SRA1025786
SRR035085.83483
454 Sequencing (SRP001806)
146
74
-
Glu
CTC
[SRA]
Identical group No.399645 (15 seq.)
>WENV181412628
OGCK01003108
[OGCK] hot springs metagenome; hot spring sediment
2979
3053
+
Glu
CTC
[ENA]
¢þ
>WENV183512438
OMKS01000475
[OMKS] sediment metagenome; hot spring sediment
21842
21916
+
Glu
CTC
[ENA]
¢þ
>WENV183514318
OMKS01015995
[OMKS] sediment metagenome; hot spring sediment
3103
3029
-
Glu
CTC
[ENA]
¢þ
>WENV170619704
FUWD013019407
[FUWD] metagenome; unknown
5232
5306
+
Glu
CTC
[ENA]
¢þ
>WENV170627825
FUWD013237795
[FUWD] metagenome; unknown
5232
5306
+
Glu
CTC
[ENA]
¢þ
>SRA1025802
SRR035085.86401
454 Sequencing (SRP001806)
227
301
+
Glu
CTC
[SRA]
>SRA1025834
SRR035085.91894
454 Sequencing (SRP001806)
223
149
-
Glu
CTC
[SRA]
>SRA1030947
SRR035087.353014
454 Sequencing (SRP001808)
120
46
-
Glu
CTC
[SRA]
>SRA1031109
SRR035087.375194
454 Sequencing (SRP001808)
94
20
-
Glu
CTC
[SRA]
>SRA1048190
SRR035094.125621
454 Sequencing (SRP001815)
89
15
-
Glu
CTC
[SRA]
>SRA1048357
SRR035094.155999
454 Sequencing (SRP001815)
516
442
-
Glu
CTC
[SRA]
>SRA1048631
SRR035094.212526
454 Sequencing (SRP001815)
379
305
-
Glu
CTC
[SRA]
>SRA1049850
SRR035095.147453
454 Sequencing (SRP001816)
400
326
-
Glu
CTC
[SRA]
>SRA1050150
SRR035095.201207
454 Sequencing (SRP001816)
401
327
-
Glu
CTC
[SRA]
>SRA1050206
SRR035095.212049
454 Sequencing (SRP001816)
514
440
-
Glu
CTC
[SRA]
Identical group No.399653 (4 seq.)
>WENV180390391
OBPK01132228
[OBPK] marine metagenome; Sterile flask
96
22
-
Glu
CTC
[ENA]
¢þ
>WENV170611846
FUWD012417183
[FUWD] metagenome; unknown
7
81
+
Glu
CTC
[ENA]
¢þ
>WENV170684666
LFRM01051470
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
228
154
-
Glu
CTC
[ENA]
¢þ
>SRA1025843
SRR035085.93590
454 Sequencing (SRP001806)
92
166
+
Glu
CTC
[SRA]
Identical group No.399671 (10 seq.)
>WENV170598591
FUWD010040546
[FUWD] metagenome; unknown
321
395
+
Glu
CTC
[ENA]
¢þ
>WENV170598592
FUWD010040550
[FUWD] metagenome; unknown
10
84
+
Glu
CTC
[ENA]
¢þ
>WENV170616594
FUWD012893040
[FUWD] metagenome; unknown
471
397
-
Glu
CTC
[ENA]
¢þ
>SRA1025975
SRR035085.119931
454 Sequencing (SRP001806)
48
122
+
Glu
CTC
[SRA]
>SRA1026100
SRR035085.143267
454 Sequencing (SRP001806)
221
147
-
Glu
CTC
[SRA]
>SRA1034596
SRR035089.131205
454 Sequencing (SRP001810)
323
397
+
Glu
CTC
[SRA]
>SRA1035262
SRR035089.269882
454 Sequencing (SRP001810)
481
407
-
Glu
CTC
[SRA]
>SRA1036298
SRR035089.490077
454 Sequencing (SRP001810)
129
55
-
Glu
CTC
[SRA]
>SRA1036515
SRR035089.535963
454 Sequencing (SRP001810)
10
84
+
Glu
CTC
[SRA]
>SRA1047731
SRR035094.31259
454 Sequencing (SRP001815)
285
211
-
Glu
CTC
[SRA]
Identical group No.399700 (12 seq.)
>WENV170626729
FUWD013229137
[FUWD] metagenome; unknown
6667
6741
+
Glu
CTC
[ENA]
¢þ
>WENV170629676
FUWD013277285
[FUWD] metagenome; unknown
9164
9238
+
Glu
CTC
[ENA]
¢þ
>SRA1017136
SRR035082.86917
454 Sequencing (SRP001803)
475
401
-
Glu
CTC
[SRA]
>SRA1018606
SRR035082.320645
454 Sequencing (SRP001803)
223
297
+
Glu
CTC
[SRA]
>SRA1026222
SRR035085.165819
454 Sequencing (SRP001806)
226
300
+
Glu
CTC
[SRA]
>SRA1026255
SRR035085.172990
454 Sequencing (SRP001806)
226
300
+
Glu
CTC
[SRA]
>SRA1032115
SRR035087.555403
454 Sequencing (SRP001808)
232
306
+
Glu
CTC
[SRA]
>SRA1032632
SRR035088.67648
454 Sequencing (SRP001809)
40
114
+
Glu
CTC
[SRA]
>SRA1034123
SRR035088.498464
454 Sequencing (SRP001809)
169
243
+
Glu
CTC
[SRA]
>SRA1043553
SRR035092.137396
454 Sequencing (SRP001813)
189
263
+
Glu
CTC
[SRA]
>SRA1047824
SRR035094.48858
454 Sequencing (SRP001815)
356
430
+
Glu
CTC
[SRA]
>SRA1048978
SRR035094.301169
454 Sequencing (SRP001815)
182
108
-
Glu
CTC
[SRA]
Identical group No.399703 (1 seq.)
>SRA1026254
SRR035085.172645
454 Sequencing (SRP001806)
158
85
-
Glu
CTC
[SRA]
Identical group No.399706 (2 seq.)
>WENV170607855
FUWD010861652
[FUWD] metagenome; unknown
130
202
+
Glu
CTC
[ENA]
¢þ
>SRA1026296
SRR035085.181531
454 Sequencing (SRP001806)
82
154
+
Glu
CTC
[SRA]
Identical group No.399721 (14 seq.)
>W131162451
AQYX01000136
Atribacterota
Atribacteria bacterium SCGC AAA252-M02 OP9 bacterium SCGC AAA252-M02 [AQYX]
4860
4786
-
Glu
CTC
[ENA]
¡û
>W131193757
ASPA01000003
Atribacterota
Atribacteria bacterium SCGC AAA255-G05 OP9 bacterium SCGC AAA255-G05 [ASPA]
63582
63508
-
Glu
CTC
[ENA]
¡û
>W131193788
ASPB01000014
Atribacterota
Atribacteria bacterium SCGC AB-164-D21 OP9 bacterium SCGC AB-164-D21 [ASPB]
4852
4778
-
Glu
CTC
[ENA]
¡û
>W131193799
ASPC01000010
Atribacterota
Atribacteria bacterium SCGC AAA255-N14 OP9 bacterium SCGC AAA255-N14 [ASPC]
29708
29634
-
Glu
CTC
[ENA]
¡û
>W141139552
AWNT01000047
Atribacterota
Atribacteria bacterium JGI OTU-1 [AWNT]
404
330
-
Glu
CTC
[ENA]
¡û
>WENV170607716
FUWD010850959
[FUWD] metagenome; unknown
162
88
-
Glu
CTC
[ENA]
¢þ
>WENV170620364
FUWD013030485
[FUWD] metagenome; unknown
566
640
+
Glu
CTC
[ENA]
¢þ
>WENV170628501
FUWD013248056
[FUWD] metagenome; unknown
566
640
+
Glu
CTC
[ENA]
¢þ
>W1910702398
MEYH01000059
Atribacterota
Candidatus Atribacteria bacterium RBG_19FT_COMBO_35_14 [MEYH]
6600
6526
-
Glu
CTC
[ENA]
¡û
>SRA1018844
SRR035082.355627
454 Sequencing (SRP001803)
185
111
-
Glu
CTC
[SRA]
>SRA1026385
SRR035085.198437
454 Sequencing (SRP001806)
84
10
-
Glu
CTC
[SRA]
>SRA1029136
SRR035087.79328
454 Sequencing (SRP001808)
74
148
+
Glu
CTC
[SRA]
>SRA1030714
SRR035087.317663
454 Sequencing (SRP001808)
78
4
-
Glu
CTC
[SRA]
>SRA1036142
SRR035089.453815
454 Sequencing (SRP001810)
385
311
-
Glu
CTC
[SRA]
Identical group No.399724 (1 seq.)
>SRA1026395
SRR035085.200604
454 Sequencing (SRP001806)
157
231
+
Glu
CTC
[SRA]
Identical group No.480656 (1 seq.)
>SRA1025464
SRR035085.15508
454 Sequencing (SRP001806)
176
105
-
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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