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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TAG
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87020 (3 seq.)
>WENV170612099
FUWD012503774
[FUWD] metagenome; unknown
37
124
+
Leu
TAG
[ENA]
¢þ
>SRA1025537
SRR035085.35591
454 Sequencing (SRP001806)
284
197
-
Leu
TAG
[SRA]
>SRA1031748
SRR035087.481274
454 Sequencing (SRP001808)
136
223
+
Leu
TAG
[SRA]
Identical group No.87034 (12 seq.)
>WENV170621998
FUWD013083143
[FUWD] metagenome; unknown
1387
1300
-
Leu
TAG
[ENA]
¢þ
>WENV170629985
FUWD013289146
[FUWD] metagenome; unknown
4951
5038
+
Leu
TAG
[ENA]
¢þ
>SRA1018852
SRR035082.357524
454 Sequencing (SRP001803)
32
119
+
Leu
TAG
[SRA]
>SRA1026165
SRR035085.157072
454 Sequencing (SRP001806)
46
133
+
Leu
TAG
[SRA]
>SRA1026347
SRR035085.190768
454 Sequencing (SRP001806)
43
130
+
Leu
TAG
[SRA]
>SRA1026562
SRR035085.228125
454 Sequencing (SRP001806)
43
130
+
Leu
TAG
[SRA]
>SRA1026628
SRR035085.244743
454 Sequencing (SRP001806)
43
130
+
Leu
TAG
[SRA]
>SRA1026733
SRR035085.275290
454 Sequencing (SRP001806)
43
130
+
Leu
TAG
[SRA]
>SRA1030545
SRR035087.293063
454 Sequencing (SRP001808)
357
270
-
Leu
TAG
[SRA]
>SRA1034446
SRR035089.97818
454 Sequencing (SRP001810)
248
335
+
Leu
TAG
[SRA]
>SRA1036034
SRR035089.431293
454 Sequencing (SRP001810)
345
258
-
Leu
TAG
[SRA]
>SRA1042934
SRR035091.469951
454 Sequencing (SRP001812)
170
257
+
Leu
TAG
[SRA]
Identical group No.112525 (8 seq.)
>WENV170615644
FUWD012863459
[FUWD] metagenome; unknown
6098
6012
-
Leu
TAG
[ENA]
¢þ
>SRA1025765
SRR035085.79460
454 Sequencing (SRP001806)
211
125
-
Leu
TAG
[SRA]
>SRA1026130
SRR035085.149208
454 Sequencing (SRP001806)
464
378
-
Leu
TAG
[SRA]
>SRA1026763
SRR035085.283840
454 Sequencing (SRP001806)
149
63
-
Leu
TAG
[SRA]
>SRA1032515
SRR035088.35145
454 Sequencing (SRP001809)
352
266
-
Leu
TAG
[SRA]
>SRA1033242
SRR035088.204396
454 Sequencing (SRP001809)
360
274
-
Leu
TAG
[SRA]
>SRA1034693
SRR035089.154550
454 Sequencing (SRP001810)
54
140
+
Leu
TAG
[SRA]
>SRA1036390
SRR035089.509024
454 Sequencing (SRP001810)
414
328
-
Leu
TAG
[SRA]
Identical group No.112531 (4 seq.)
>WENV170612647
FUWD012650262
[FUWD] metagenome; unknown
241
155
-
Leu
TAG
[ENA]
¢þ
>SRA1026051
SRR035085.132335
454 Sequencing (SRP001806)
220
134
-
Leu
TAG
[SRA]
>SRA1029695
SRR035087.165971
454 Sequencing (SRP001808)
348
262
-
Leu
TAG
[SRA]
>SRA1044141
SRR035092.230527
454 Sequencing (SRP001813)
241
155
-
Leu
TAG
[SRA]
Identical group No.112540 (22 seq.)
>WENV170598627
FUWD010042447
[FUWD] metagenome; unknown
604
690
+
Leu
TAG
[ENA]
¢þ
>WENV170598636
FUWD010042696
[FUWD] metagenome; unknown
409
323
-
Leu
TAG
[ENA]
¢þ
>WENV170616313
FUWD012883945
[FUWD] metagenome; unknown
594
508
-
Leu
TAG
[ENA]
¢þ
>WENV170626763
FUWD013229345
[FUWD] metagenome; unknown
204
118
-
Leu
TAG
[ENA]
¢þ
>SRA1017308
SRR035082.116111
454 Sequencing (SRP001803)
138
52
-
Leu
TAG
[SRA]
>SRA1018229
SRR035082.258708
454 Sequencing (SRP001803)
329
417
+
Leu
TAG
[SRA]
>SRA1019537
SRR035082.473154
454 Sequencing (SRP001803)
192
106
-
Leu
TAG
[SRA]
>SRA1026274
SRR035085.177458
454 Sequencing (SRP001806)
151
65
-
Leu
TAG
[SRA]
>SRA1026304
SRR035085.182311
454 Sequencing (SRP001806)
153
67
-
Leu
TAG
[SRA]
>SRA1026341
SRR035085.189235
454 Sequencing (SRP001806)
153
67
-
Leu
TAG
[SRA]
>SRA1033395
SRR035088.244520
454 Sequencing (SRP001809)
151
65
-
Leu
TAG
[SRA]
>SRA1034206
SRR035089.23405
454 Sequencing (SRP001810)
415
329
-
Leu
TAG
[SRA]
>SRA1035340
SRR035089.286268
454 Sequencing (SRP001810)
47
133
+
Leu
TAG
[SRA]
>SRA1040824
SRR035091.154482
454 Sequencing (SRP001812)
277
191
-
Leu
TAG
[SRA]
>SRA1042207
SRR035091.356183
454 Sequencing (SRP001812)
73
159
+
Leu
TAG
[SRA]
>SRA1047925
SRR035094.69375
454 Sequencing (SRP001815)
348
262
-
Leu
TAG
[SRA]
>SRA1048986
SRR035094.303934
454 Sequencing (SRP001815)
38
124
+
Leu
TAG
[SRA]
>SRA1049193
SRR035095.35596
454 Sequencing (SRP001816)
371
285
-
Leu
TAG
[SRA]
>SRA1049567
SRR035095.96893
454 Sequencing (SRP001816)
189
103
-
Leu
TAG
[SRA]
>SRA1049674
SRR035095.116429
454 Sequencing (SRP001816)
444
358
-
Leu
TAG
[SRA]
>SRA1049719
SRR035095.125173
454 Sequencing (SRP001816)
267
353
+
Leu
TAG
[SRA]
>SRA1050661
SRR035095.316937
454 Sequencing (SRP001816)
214
128
-
Leu
TAG
[SRA]
Identical group No.112547 (1 seq.)
>SRA1026564
SRR035085.228938
454 Sequencing (SRP001806)
144
61
-
Leu
TAG
[SRA]
Identical group No.153845 (1 seq.)
>SRA1025655
SRR035085.59118
454 Sequencing (SRP001806)
115
197
+
Leu
TAG
[SRA]
Identical group No.153852 (2 seq.)
>SRA1025960
SRR035085.117372
454 Sequencing (SRP001806)
396
311
-
Leu
TAG
[SRA]
>SRA1048474
SRR035094.181841
454 Sequencing (SRP001815)
131
46
-
Leu
TAG
[SRA]
Identical group No.153856 (1 seq.)
>SRA1026087
SRR035085.140750
454 Sequencing (SRP001806)
282
367
+
Leu
TAG
[SRA]
Identical group No.180189 (3 seq.)
>WENV170612028
FUWD012485430
[FUWD] metagenome; unknown
88
172
+
Leu
TAG
[ENA]
¢þ
>SRA1025544
SRR035085.36311
454 Sequencing (SRP001806)
299
382
+
Leu
TAG
[SRA]
>SRA1047823
SRR035094.48562
454 Sequencing (SRP001815)
165
249
+
Leu
TAG
[SRA]
Identical group No.180190 (3 seq.)
>SRA1025556
SRR035085.38732
454 Sequencing (SRP001806)
316
234
-
Leu
TAG
[SRA]
>SRA1025809
SRR035085.87441
454 Sequencing (SRP001806)
317
235
-
Leu
TAG
[SRA]
>SRA1026101
SRR035085.143553
454 Sequencing (SRP001806)
317
235
-
Leu
TAG
[SRA]
Identical group No.180193 (1 seq.)
>SRA1025783
SRR035085.81994
454 Sequencing (SRP001806)
63
147
+
Leu
TAG
[SRA]
Identical group No.180194 (1 seq.)
>SRA1025862
SRR035085.96510
454 Sequencing (SRP001806)
284
366
+
Leu
TAG
[SRA]
Identical group No.180195 (2 seq.)
>SRA1025876
SRR035085.100907
454 Sequencing (SRP001806)
128
47
-
Leu
TAG
[SRA]
>SRA1025963
SRR035085.118046
454 Sequencing (SRP001806)
306
225
-
Leu
TAG
[SRA]
Identical group No.180198 (32 seq.)
>WENV181323719
OFKZ01000519
[OFKZ] marine metagenome; sea ice
1771
1689
-
Leu
TAG
[ENA]
¢þ
>WENV181324115
OFLC01000025
[OFLC] marine metagenome; melt pond
6148
6230
+
Leu
TAG
[ENA]
¢þ
>WENV181324496
OFLF01000033
[OFLF] marine metagenome; melt pond
9089
9007
-
Leu
TAG
[ENA]
¢þ
>WENV181325246
OFLI01021148
[OFLI] seawater metagenome; seawater
263
345
+
Leu
TAG
[ENA]
¢þ
>WENV183615073
OOEA01049044
[OOEA] marine metagenome; sea ice
173
255
+
Leu
TAG
[ENA]
¢þ
>WENV183618680
OOFO01019837
[OOFO] marine metagenome; seawater
281
363
+
Leu
TAG
[ENA]
¢þ
>WENV183620895
OOFT01000009
[OOFT] marine metagenome; sea ice
35397
35479
+
Leu
TAG
[ENA]
¢þ
>WENV183623673
OOGA01032638
[OOGA] marine metagenome; sea ice
91
9
-
Leu
TAG
[ENA]
¢þ
>WENV183624506
OOGD01022657
[OOGD] marine metagenome; sea ice
601
519
-
Leu
TAG
[ENA]
¢þ
>WENV183625734
OOGG01015764
[OOGG] marine metagenome; sea ice
747
665
-
Leu
TAG
[ENA]
¢þ
>WENV170567718
FLMP01004200
[FLMP] seawater metagenome; seawater
480
396
-
Leu
TAG
[ENA]
¢þ
>WENV170627060
FUWD013230988
[FUWD] metagenome; unknown
60343
60427
+
Leu
TAG
[ENA]
¢þ
>WENV170627068
FUWD013231025
[FUWD] metagenome; unknown
12157
12073
-
Leu
TAG
[ENA]
¢þ
>WENV170627150
FUWD013231696
[FUWD] metagenome; unknown
60402
60486
+
Leu
TAG
[ENA]
¢þ
>WENV170627576
FUWD013233594
[FUWD] metagenome; unknown
60343
60427
+
Leu
TAG
[ENA]
¢þ
>WENV170627600
FUWD013233934
[FUWD] metagenome; unknown
12157
12073
-
Leu
TAG
[ENA]
¢þ
>WENV170632079
FUWD013378090
[FUWD] metagenome; unknown
60402
60486
+
Leu
TAG
[ENA]
¢þ
>WENV170951031
MEHZ011532603
[MEHZ] marine metagenome; marine surface water
719
803
+
Leu
TAG
[ENA]
¢þ
>SRA1019671
SRR035082.498366
454 Sequencing (SRP001803)
217
133
-
Leu
TAG
[SRA]
>SRA1023187
SRR035084.31259
454 Sequencing (SRP001805)
13
97
+
Leu
TAG
[SRA]
>SRA1024052
SRR035084.237544
454 Sequencing (SRP001805)
123
39
-
Leu
TAG
[SRA]
>SRA1025081
SRR035084.479816
454 Sequencing (SRP001805)
304
220
-
Leu
TAG
[SRA]
>SRA1025172
SRR035084.506383
454 Sequencing (SRP001805)
145
61
-
Leu
TAG
[SRA]
>SRA1026004
SRR035085.124859
454 Sequencing (SRP001806)
288
204
-
Leu
TAG
[SRA]
>SRA1026065
SRR035085.135280
454 Sequencing (SRP001806)
397
313
-
Leu
TAG
[SRA]
>SRA1045580
SRR035093.128512
454 Sequencing (SRP001814)
118
34
-
Leu
TAG
[SRA]
>SRA1046438
SRR035093.306327
454 Sequencing (SRP001814)
203
287
+
Leu
TAG
[SRA]
>SRA1052443
SRR035098.205045
454 Sequencing (SRP001819)
108
24
-
Leu
TAG
[SRA]
>SRA1052503
SRR035098.216240
454 Sequencing (SRP001819)
426
342
-
Leu
TAG
[SRA]
>W121063470
AJKR01000003
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
440617
440701
+
Leu
TAG
[ENA]
¡û
>W1610625714
LIBA01000004
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
5216
5132
-
Leu
TAG
[ENA]
¡û
>W1710756841
LIBA01000004
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
5216
5132
-
Leu
TAG
[ENA]
¡û
Identical group No.180200 (1 seq.)
>SRA1026145
SRR035085.153145
454 Sequencing (SRP001806)
60
144
+
Leu
TAG
[SRA]
Identical group No.180201 (3 seq.)
>WENV170611870
FUWD012425582
[FUWD] metagenome; unknown
231
315
+
Leu
TAG
[ENA]
¢þ
>SRA1026231
SRR035085.167438
454 Sequencing (SRP001806)
241
325
+
Leu
TAG
[SRA]
>SRA1026670
SRR035085.254544
454 Sequencing (SRP001806)
241
325
+
Leu
TAG
[SRA]
Identical group No.180203 (5 seq.)
>WENV170611882
FUWD012429005
[FUWD] metagenome; unknown
55
136
+
Leu
TAG
[ENA]
¢þ
>SRA1026243
SRR035085.170203
454 Sequencing (SRP001806)
65
146
+
Leu
TAG
[SRA]
>SRA1026394
SRR035085.200428
454 Sequencing (SRP001806)
65
146
+
Leu
TAG
[SRA]
>SRA1026403
SRR035085.202010
454 Sequencing (SRP001806)
65
146
+
Leu
TAG
[SRA]
>SRA1026583
SRR035085.232934
454 Sequencing (SRP001806)
65
146
+
Leu
TAG
[SRA]
Identical group No.180205 (7 seq.)
>WENV170623245
FUWD013142859
[FUWD] metagenome; unknown
1065
981
-
Leu
TAG
[ENA]
¢þ
>WENV170631502
FUWD013355056
[FUWD] metagenome; unknown
1065
981
-
Leu
TAG
[ENA]
¢þ
>SRA1026333
SRR035085.187229
454 Sequencing (SRP001806)
266
350
+
Leu
TAG
[SRA]
>SRA1026629
SRR035085.245395
454 Sequencing (SRP001806)
266
350
+
Leu
TAG
[SRA]
>SRA1029034
SRR035087.62399
454 Sequencing (SRP001808)
251
335
+
Leu
TAG
[SRA]
>SRA1035651
SRR035089.349652
454 Sequencing (SRP001810)
14
98
+
Leu
TAG
[SRA]
>SRA1043214
SRR035092.74271
454 Sequencing (SRP001813)
22
106
+
Leu
TAG
[SRA]
Identical group No.180206 (1 seq.)
>SRA1026369
SRR035085.194311
454 Sequencing (SRP001806)
164
245
+
Leu
TAG
[SRA]
Identical group No.180207 (14 seq.)
>W131157827
AQSW01000083
Atribacterota
Atribacteria bacterium SCGC AB-164-A22 OP9 bacterium SCGC AB-164-A22 [AQSW]
30012
30096
+
Leu
TAG
[ENA]
¡û
>WENV170017563
BARU01001111
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
848
764
-
Leu
TAG
[ENA]
¢þ
>WENV170600886
FUWD010146533
[FUWD] metagenome; unknown
107
191
+
Leu
TAG
[ENA]
¢þ
>WENV170626574
FUWD013225773
[FUWD] metagenome; unknown
785
869
+
Leu
TAG
[ENA]
¢þ
>WENV170677262
LDZT01004572
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10609
10693
+
Leu
TAG
[ENA]
¢þ
>WENV170694475
LGVD01064148
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
129
45
-
Leu
TAG
[ENA]
¢þ
>WENV170697665
LGVF01170491
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
3278
3194
-
Leu
TAG
[ENA]
¢þ
>W1910870309
NCRO01000049
Atribacterota
Candidatus Atribacteria bacterium RS-JS1 [NCRO]
3259
3343
+
Leu
TAG
[ENA]
¡û
>SRA1026374
SRR035085.195082
454 Sequencing (SRP001806)
313
229
-
Leu
TAG
[SRA]
>SRA1031491
SRR035087.438147
454 Sequencing (SRP001808)
266
350
+
Leu
TAG
[SRA]
>SRA1032036
SRR035087.539030
454 Sequencing (SRP001808)
481
397
-
Leu
TAG
[SRA]
>SRA1033726
SRR035088.336752
454 Sequencing (SRP001809)
119
203
+
Leu
TAG
[SRA]
>W1610613590
LGGA01000005
Atribacterota
Atribacteria bacterium 34_128 [LGGA]
10609
10693
+
Leu
TAG
[ENA]
¡û
>W1710734762
LGGA01000005
Atribacterota
Atribacteria bacterium 34_128 [LGGA]
10609
10693
+
Leu
TAG
[ENA]
¡û
Identical group No.180208 (4 seq.)
>WENV170601164
FUWD010159189
[FUWD] metagenome; unknown
570
654
+
Leu
TAG
[ENA]
¢þ
>SRA1026402
SRR035085.201976
454 Sequencing (SRP001806)
207
123
-
Leu
TAG
[SRA]
>SRA1029431
SRR035087.126482
454 Sequencing (SRP001808)
371
287
-
Leu
TAG
[SRA]
>SRA1030010
SRR035087.215525
454 Sequencing (SRP001808)
86
170
+
Leu
TAG
[SRA]
Identical group No.180209 (3 seq.)
>SRA1026436
SRR035085.206434
454 Sequencing (SRP001806)
90
6
-
Leu
TAG
[SRA]
>SRA1026442
SRR035085.207400
454 Sequencing (SRP001806)
90
6
-
Leu
TAG
[SRA]
>SRA1026796
SRR035085.292677
454 Sequencing (SRP001806)
90
6
-
Leu
TAG
[SRA]
Identical group No.180218 (1 seq.)
>SRA1026593
SRR035085.234607
454 Sequencing (SRP001806)
63
147
+
Leu
TAG
[SRA]
Identical group No.218060 (3 seq.)
>WENV170607831
FUWD010859475
[FUWD] metagenome; unknown
341
260
-
Leu
TAG
[ENA]
¢þ
>SRA1025624
SRR035085.52148
454 Sequencing (SRP001806)
425
344
-
Leu
TAG
[SRA]
>SRA1032308
SRR035087.600101
454 Sequencing (SRP001808)
88
169
+
Leu
TAG
[SRA]
Identical group No.218064 (2 seq.)
>W1710986625
LPUF01000001
Gammaproteobacteria
Methyloprofundus sedimenti [LPUF]
1211783
1211866
+
Leu
TAG
[ENA]
¡û
>SRA1026308
SRR035085.183128
454 Sequencing (SRP001806)
171
88
-
Leu
TAG
[SRA]
Identical group No.272459 (1 seq.)
>SRA1026690
SRR035085.261730
454 Sequencing (SRP001806)
82
155
+
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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