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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = CGA
HIT:
36 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4391 (10 seq.)
>WENV170624555
FUWD013183389
[FUWD] metagenome; unknown
5623
5528
-
Ser
CGA
[ENA]
¢þ
>WENV170632844
FUWD013387975
[FUWD] metagenome; unknown
5623
5528
-
Ser
CGA
[ENA]
¢þ
>WENV170694115
LGVD01012047
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
157
62
-
Ser
CGA
[ENA]
¢þ
>WENV170695564
LGVE01121882
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
354
449
+
Ser
CGA
[ENA]
¢þ
>WENV170697924
LGVF01222883
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
304
399
+
Ser
CGA
[ENA]
¢þ
>SRA1032487
SRR035088.24006
454 Sequencing (SRP001809)
143
48
-
Ser
CGA
[SRA]
>SRA1032978
SRR035088.142468
454 Sequencing (SRP001809)
36
131
+
Ser
CGA
[SRA]
>SRA1033502
SRR035088.274810
454 Sequencing (SRP001809)
235
330
+
Ser
CGA
[SRA]
>SRA1048500
SRR035094.187787
454 Sequencing (SRP001815)
362
267
-
Ser
CGA
[SRA]
>SRA1050415
SRR035095.258119
454 Sequencing (SRP001816)
31
126
+
Ser
CGA
[SRA]
Identical group No.7006 (1 seq.)
>SRA1049988
SRR035095.172233
454 Sequencing (SRP001816)
112
206
+
Ser
CGA
[SRA]
Identical group No.8251 (18 seq.)
>WENV170599776
FUWD010091905
[FUWD] metagenome; unknown
98
5
-
Ser
CGA
[ENA]
¢þ
>WENV170616560
FUWD012891147
[FUWD] metagenome; unknown
3496
3403
-
Ser
CGA
[ENA]
¢þ
>SRA1026001
SRR035085.124619
454 Sequencing (SRP001806)
279
372
+
Ser
CGA
[SRA]
>SRA1026239
SRR035085.169498
454 Sequencing (SRP001806)
132
39
-
Ser
CGA
[SRA]
>SRA1026398
SRR035085.201684
454 Sequencing (SRP001806)
405
312
-
Ser
CGA
[SRA]
>SRA1026449
SRR035085.208930
454 Sequencing (SRP001806)
269
362
+
Ser
CGA
[SRA]
>SRA1026755
SRR035085.280550
454 Sequencing (SRP001806)
44
137
+
Ser
CGA
[SRA]
>SRA1029042
SRR035087.64489
454 Sequencing (SRP001808)
411
318
-
Ser
CGA
[SRA]
>SRA1029458
SRR035087.130270
454 Sequencing (SRP001808)
177
84
-
Ser
CGA
[SRA]
>SRA1030801
SRR035087.333235
454 Sequencing (SRP001808)
100
193
+
Ser
CGA
[SRA]
>SRA1030953
SRR035087.354145
454 Sequencing (SRP001808)
412
319
-
Ser
CGA
[SRA]
>SRA1032293
SRR035087.596928
454 Sequencing (SRP001808)
397
304
-
Ser
CGA
[SRA]
>SRA1035834
SRR035089.384851
454 Sequencing (SRP001810)
232
139
-
Ser
CGA
[SRA]
>SRA1036006
SRR035089.425438
454 Sequencing (SRP001810)
164
71
-
Ser
CGA
[SRA]
>SRA1049066
SRR035095.13633
454 Sequencing (SRP001816)
168
75
-
Ser
CGA
[SRA]
>SRA1049187
SRR035095.34347
454 Sequencing (SRP001816)
340
433
+
Ser
CGA
[SRA]
>SRA1049747
SRR035095.132861
454 Sequencing (SRP001816)
340
433
+
Ser
CGA
[SRA]
>SRA1050288
SRR035095.232058
454 Sequencing (SRP001816)
188
95
-
Ser
CGA
[SRA]
Identical group No.9995 (3 seq.)
>WENV170612849
FUWD012702907
[FUWD] metagenome; unknown
109
16
-
Ser
CGA
[ENA]
¢þ
>SRA1050648
SRR035095.312829
454 Sequencing (SRP001816)
119
26
-
Ser
CGA
[SRA]
>SRA1050697
SRR035095.329861
454 Sequencing (SRP001816)
119
26
-
Ser
CGA
[SRA]
Identical group No.16322 (1 seq.)
>SRA1049585
SRR035095.98838
454 Sequencing (SRP001816)
164
256
+
Ser
CGA
[SRA]
Identical group No.24651 (4 seq.)
>WENV170603278
FUWD010298307
[FUWD] metagenome; unknown
670
579
-
Ser
CGA
[ENA]
¢þ
>SRA1017890
SRR035082.210885
454 Sequencing (SRP001803)
403
312
-
Ser
CGA
[SRA]
>SRA1042574
SRR035091.410760
454 Sequencing (SRP001812)
242
333
+
Ser
CGA
[SRA]
>SRA1049786
SRR035095.138360
454 Sequencing (SRP001816)
22
113
+
Ser
CGA
[SRA]
Identical group No.24688 (2 seq.)
>WENV170612231
FUWD012544915
[FUWD] metagenome; unknown
126
215
+
Ser
CGA
[ENA]
¢þ
>SRA1049182
SRR035095.33818
454 Sequencing (SRP001816)
266
177
-
Ser
CGA
[SRA]
Identical group No.25449 (1 seq.)
>SRA1049467
SRR035095.82369
454 Sequencing (SRP001816)
119
28
-
Ser
CGA
[SRA]
Identical group No.25452 (1 seq.)
>SRA1050135
SRR035095.197961
454 Sequencing (SRP001816)
192
103
-
Ser
CGA
[SRA]
Identical group No.25453 (1 seq.)
>SRA1050176
SRR035095.206434
454 Sequencing (SRP001816)
202
111
-
Ser
CGA
[SRA]
Identical group No.25455 (1 seq.)
>SRA1050681
SRR035095.324939
454 Sequencing (SRP001816)
201
292
+
Ser
CGA
[SRA]
Identical group No.30421 (5 seq.)
>WENV170626610
FUWD013226691
[FUWD] metagenome; unknown
188
98
-
Ser
CGA
[ENA]
¢þ
>WENV170634206
FUWD013412153
[FUWD] metagenome; unknown
5321
5411
+
Ser
CGA
[ENA]
¢þ
>SRA1034738
SRR035089.163527
454 Sequencing (SRP001810)
288
198
-
Ser
CGA
[SRA]
>SRA1044969
SRR035092.381857
454 Sequencing (SRP001813)
88
178
+
Ser
CGA
[SRA]
>SRA1049889
SRR035095.154743
454 Sequencing (SRP001816)
82
172
+
Ser
CGA
[SRA]
Identical group No.37769 (2 seq.)
>WENV170600781
FUWD010142402
[FUWD] metagenome; unknown
24
114
+
Ser
CGA
[ENA]
¢þ
>SRA1050229
SRR035095.217143
454 Sequencing (SRP001816)
219
131
-
Ser
CGA
[SRA]
Identical group No.37807 (5 seq.)
>WENV170621225
FUWD013052937
[FUWD] metagenome; unknown
854
764
-
Ser
CGA
[ENA]
¢þ
>WENV170629811
FUWD013282543
[FUWD] metagenome; unknown
4752
4662
-
Ser
CGA
[ENA]
¢þ
>SRA1017747
SRR035082.189534
454 Sequencing (SRP001803)
50
140
+
Ser
CGA
[SRA]
>SRA1018708
SRR035082.335791
454 Sequencing (SRP001803)
50
140
+
Ser
CGA
[SRA]
>SRA1049982
SRR035095.171652
454 Sequencing (SRP001816)
210
300
+
Ser
CGA
[SRA]
Identical group No.38968 (1 seq.)
>SRA1049514
SRR035095.88562
454 Sequencing (SRP001816)
231
143
-
Ser
CGA
[SRA]
Identical group No.38969 (1 seq.)
>SRA1049773
SRR035095.136965
454 Sequencing (SRP001816)
343
433
+
Ser
CGA
[SRA]
Identical group No.38972 (1 seq.)
>SRA1050088
SRR035095.189739
454 Sequencing (SRP001816)
110
200
+
Ser
CGA
[SRA]
Identical group No.38976 (1 seq.)
>SRA1050702
SRR035095.331329
454 Sequencing (SRP001816)
52
142
+
Ser
CGA
[SRA]
Identical group No.52745 (4 seq.)
>WENV170612832
FUWD012698464
[FUWD] metagenome; unknown
345
256
-
Ser
CGA
[ENA]
¢þ
>SRA1050168
SRR035095.204482
454 Sequencing (SRP001816)
354
265
-
Ser
CGA
[SRA]
>SRA1054004
SRR035099.32013
454 Sequencing (SRP001820)
278
189
-
Ser
CGA
[SRA]
>SRA1054016
SRR035099.35812
454 Sequencing (SRP001820)
439
350
-
Ser
CGA
[SRA]
Identical group No.57990 (2 seq.)
>WENV170612792
FUWD012690079
[FUWD] metagenome; unknown
78
167
+
Ser
CGA
[ENA]
¢þ
>SRA1049406
SRR035095.72269
454 Sequencing (SRP001816)
88
177
+
Ser
CGA
[SRA]
Identical group No.60073 (1 seq.)
>SRA1049422
SRR035095.75066
454 Sequencing (SRP001816)
292
381
+
Ser
CGA
[SRA]
Identical group No.60077 (2 seq.)
>SRA1049853
SRR035095.148090
454 Sequencing (SRP001816)
428
339
-
Ser
CGA
[SRA]
>SRA1050494
SRR035095.275896
454 Sequencing (SRP001816)
427
340
-
Ser
CGA
[SRA]
Identical group No.60080 (1 seq.)
>SRA1050103
SRR035095.192321
454 Sequencing (SRP001816)
296
209
-
Ser
CGA
[SRA]
Identical group No.60081 (1 seq.)
>SRA1050131
SRR035095.196937
454 Sequencing (SRP001816)
186
99
-
Ser
CGA
[SRA]
Identical group No.79257 (4 seq.)
>WENV170612675
FUWD012656162
[FUWD] metagenome; unknown
145
57
-
Ser
CGA
[ENA]
¢þ
>SRA1044834
SRR035092.353517
454 Sequencing (SRP001813)
145
57
-
Ser
CGA
[SRA]
>SRA1049139
SRR035095.26992
454 Sequencing (SRP001816)
241
153
-
Ser
CGA
[SRA]
>SRA1049249
SRR035095.44460
454 Sequencing (SRP001816)
243
155
-
Ser
CGA
[SRA]
Identical group No.80344 (1 seq.)
>SRA1049703
SRR035095.121695
454 Sequencing (SRP001816)
224
136
-
Ser
CGA
[SRA]
Identical group No.80352 (1 seq.)
>SRA1050605
SRR035095.303961
454 Sequencing (SRP001816)
138
226
+
Ser
CGA
[SRA]
Identical group No.87068 (10 seq.)
>WENV170627300
FUWD013232509
[FUWD] metagenome; unknown
5509
5422
-
Ser
CGA
[ENA]
¢þ
>SRA1030661
SRR035087.310930
454 Sequencing (SRP001808)
111
24
-
Ser
CGA
[SRA]
>SRA1034025
SRR035088.451778
454 Sequencing (SRP001809)
310
223
-
Ser
CGA
[SRA]
>SRA1035115
SRR035089.240303
454 Sequencing (SRP001810)
127
40
-
Ser
CGA
[SRA]
>SRA1040451
SRR035091.99602
454 Sequencing (SRP001812)
94
7
-
Ser
CGA
[SRA]
>SRA1041823
SRR035091.299683
454 Sequencing (SRP001812)
157
70
-
Ser
CGA
[SRA]
>SRA1042749
SRR035091.440409
454 Sequencing (SRP001812)
456
369
-
Ser
CGA
[SRA]
>SRA1043587
SRR035092.142745
454 Sequencing (SRP001813)
152
239
+
Ser
CGA
[SRA]
>SRA1043715
SRR035092.164413
454 Sequencing (SRP001813)
467
380
-
Ser
CGA
[SRA]
>SRA1049710
SRR035095.123259
454 Sequencing (SRP001816)
526
439
-
Ser
CGA
[SRA]
Identical group No.98488 (2 seq.)
>WENV170607783
FUWD010855804
[FUWD] metagenome; unknown
599
512
-
Ser
CGA
[ENA]
¢þ
>SRA1049973
SRR035095.170557
454 Sequencing (SRP001816)
98
185
+
Ser
CGA
[SRA]
Identical group No.98618 (4 seq.)
>WENV170623038
FUWD013133888
[FUWD] metagenome; unknown
807
722
-
Ser
CGA
[ENA]
¢þ
>WENV170631272
FUWD013346934
[FUWD] metagenome; unknown
807
722
-
Ser
CGA
[ENA]
¢þ
>SRA1018225
SRR035082.258329
454 Sequencing (SRP001803)
112
27
-
Ser
CGA
[SRA]
>SRA1049431
SRR035095.77098
454 Sequencing (SRP001816)
34
119
+
Ser
CGA
[SRA]
Identical group No.131614 (5 seq.)
>WENV170608221
FUWD010903468
[FUWD] metagenome; unknown
189
103
-
Ser
CGA
[ENA]
¢þ
>SRA1049000
SRR035094.308198
454 Sequencing (SRP001815)
239
153
-
Ser
CGA
[SRA]
>SRA1049865
SRR035095.149823
454 Sequencing (SRP001816)
145
59
-
Ser
CGA
[SRA]
>SRA1050342
SRR035095.241113
454 Sequencing (SRP001816)
329
415
+
Ser
CGA
[SRA]
>SRA1050634
SRR035095.310363
454 Sequencing (SRP001816)
212
298
+
Ser
CGA
[SRA]
Identical group No.134868 (1 seq.)
>SRA1049788
SRR035095.138778
454 Sequencing (SRP001816)
572
486
-
Ser
CGA
[SRA]
Identical group No.153880 (5 seq.)
>WENV170612261
FUWD012556861
[FUWD] metagenome; unknown
163
248
+
Ser
CGA
[ENA]
¢þ
>SRA1034751
SRR035089.166571
454 Sequencing (SRP001810)
163
248
+
Ser
CGA
[SRA]
>SRA1042214
SRR035091.356724
454 Sequencing (SRP001812)
276
191
-
Ser
CGA
[SRA]
>SRA1049267
SRR035095.47760
454 Sequencing (SRP001816)
338
253
-
Ser
CGA
[SRA]
>SRA1049325
SRR035095.57068
454 Sequencing (SRP001816)
337
252
-
Ser
CGA
[SRA]
Identical group No.157496 (6 seq.)
>WENV170613369
FUWD012800133
[FUWD] metagenome; unknown
148
233
+
Ser
CGA
[ENA]
¢þ
>WENV170626505
FUWD013223964
[FUWD] metagenome; unknown
267
184
-
Ser
CGA
[ENA]
¢þ
>SRA1017918
SRR035082.213887
454 Sequencing (SRP001803)
335
418
+
Ser
CGA
[SRA]
>SRA1030278
SRR035087.254876
454 Sequencing (SRP001808)
267
184
-
Ser
CGA
[SRA]
>SRA1033141
SRR035088.181650
454 Sequencing (SRP001809)
69
152
+
Ser
CGA
[SRA]
>SRA1049824
SRR035095.143692
454 Sequencing (SRP001816)
198
115
-
Ser
CGA
[SRA]
Identical group No.167770 (1 seq.)
>SRA1049104
SRR035095.20248
454 Sequencing (SRP001816)
591
506
-
Ser
CGA
[SRA]
Identical group No.222837 (6 seq.)
>WENV170608170
FUWD010898580
[FUWD] metagenome; unknown
100
184
+
Ser
CGA
[ENA]
¢þ
>SRA1032984
SRR035088.144017
454 Sequencing (SRP001809)
234
150
-
Ser
CGA
[SRA]
>SRA1041302
SRR035091.225498
454 Sequencing (SRP001812)
53
137
+
Ser
CGA
[SRA]
>SRA1043574
SRR035092.140937
454 Sequencing (SRP001813)
122
206
+
Ser
CGA
[SRA]
>SRA1049194
SRR035095.35758
454 Sequencing (SRP001816)
98
182
+
Ser
CGA
[SRA]
>SRA1049697
SRR035095.121279
454 Sequencing (SRP001816)
76
160
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK