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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001816)
Anticodon = GCC
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.357759 (2 seq.)
>WENV170604388
FUWD010392380
[FUWD] metagenome; unknown
58
134
+
Gly
GCC
[ENA]
¢þ
>SRA1050525
SRR035095.282341
454 Sequencing (SRP001816)
356
432
+
Gly
GCC
[SRA]
Identical group No.358943 (5 seq.)
>WENV170626733
FUWD013229155
[FUWD] metagenome; unknown
3304
3230
-
Gly
GCC
[ENA]
¢þ
>WENV170629998
FUWD013289331
[FUWD] metagenome; unknown
8608
8534
-
Gly
GCC
[ENA]
¢þ
>SRA1016867
SRR035082.44910
454 Sequencing (SRP001803)
17
91
+
Gly
GCC
[SRA]
>SRA1044357
SRR035092.265662
454 Sequencing (SRP001813)
262
188
-
Gly
GCC
[SRA]
>SRA1049509
SRR035095.87911
454 Sequencing (SRP001816)
339
413
+
Gly
GCC
[SRA]
Identical group No.453620 (10 seq.)
>WENV170612150
FUWD012513221
[FUWD] metagenome; unknown
290
215
-
Gly
GCC
[ENA]
¢þ
>WENV170625846
FUWD013207233
[FUWD] metagenome; unknown
1903
1828
-
Gly
GCC
[ENA]
¢þ
>WENV170634065
FUWD013408945
[FUWD] metagenome; unknown
1903
1828
-
Gly
GCC
[ENA]
¢þ
>SRA1030853
SRR035087.339540
454 Sequencing (SRP001808)
468
393
-
Gly
GCC
[SRA]
>SRA1032529
SRR035088.39268
454 Sequencing (SRP001809)
451
376
-
Gly
GCC
[SRA]
>SRA1033233
SRR035088.202038
454 Sequencing (SRP001809)
392
317
-
Gly
GCC
[SRA]
>SRA1035005
SRR035089.216786
454 Sequencing (SRP001810)
328
403
+
Gly
GCC
[SRA]
>SRA1049706
SRR035095.122164
454 Sequencing (SRP001816)
68
143
+
Gly
GCC
[SRA]
>W10123423
ADZZ01000070
Unclassified
delta proteobacterium NaphS2 [ADZZ]
2782
2707
-
Gly
GCC
[ENA]
¡û
>W11130221
ADZZ01000070
Unclassified
delta proteobacterium NaphS2 [ADZZ]
2782
2707
-
Gly
GCC
[ENA]
¡û
Identical group No.484104 (3 seq.)
>WENV170611965
FUWD012470739
[FUWD] metagenome; unknown
207
132
-
Gly
GCC
[ENA]
¢þ
>SRA1029169
SRR035087.86330
454 Sequencing (SRP001808)
370
295
-
Gly
GCC
[SRA]
>SRA1049100
SRR035095.19164
454 Sequencing (SRP001816)
218
143
-
Gly
GCC
[SRA]
Identical group No.563113 (1 seq.)
>SRA1049887
SRR035095.154430
454 Sequencing (SRP001816)
433
358
-
Gly
GCC
[SRA]
Identical group No.654302 (2 seq.)
>SRA1025964
SRR035085.118046
454 Sequencing (SRP001806)
98
24
-
Gly
GCC
[SRA]
>SRA1050542
SRR035095.287665
454 Sequencing (SRP001816)
91
165
+
Gly
GCC
[SRA]
Identical group No.654348 (9 seq.)
>WENV170598876
FUWD010052990
[FUWD] metagenome; unknown
432
506
+
Gly
GCC
[ENA]
¢þ
>WENV170624831
FUWD013187434
[FUWD] metagenome; unknown
346
272
-
Gly
GCC
[ENA]
¢þ
>WENV170633099
FUWD013391325
[FUWD] metagenome; unknown
346
272
-
Gly
GCC
[ENA]
¢þ
>SRA1026336
SRR035085.187784
454 Sequencing (SRP001806)
71
145
+
Gly
GCC
[SRA]
>SRA1026438
SRR035085.207234
454 Sequencing (SRP001806)
103
177
+
Gly
GCC
[SRA]
>SRA1031764
SRR035087.484317
454 Sequencing (SRP001808)
319
393
+
Gly
GCC
[SRA]
>SRA1033475
SRR035088.268573
454 Sequencing (SRP001809)
251
325
+
Gly
GCC
[SRA]
>SRA1033966
SRR035088.425241
454 Sequencing (SRP001809)
124
50
-
Gly
GCC
[SRA]
>SRA1050664
SRR035095.318368
454 Sequencing (SRP001816)
83
157
+
Gly
GCC
[SRA]
Identical group No.654382 (20 seq.)
>W131162458
AQYX01000174
Atribacterota
Atribacteria bacterium SCGC AAA252-M02 OP9 bacterium SCGC AAA252-M02 [AQYX]
1576
1650
+
Gly
GCC
[ENA]
¡û
>W131193731
ASOX01000020
Atribacterota
Atribacteria bacterium SCGC AB-164-P05 OP9 bacterium SCGC AB-164-P05 [ASOX]
2197
2271
+
Gly
GCC
[ENA]
¡û
>W131193767
ASPA01000029
Atribacterota
Atribacteria bacterium SCGC AAA255-G05 OP9 bacterium SCGC AAA255-G05 [ASPA]
8014
8088
+
Gly
GCC
[ENA]
¡û
>W131203645
ASZL01000006
Atribacterota
Atribacteria bacterium SCGC AB-164-M20 OP9 bacterium SCGC AB-164-M20 [ASZL]
1576
1650
+
Gly
GCC
[ENA]
¡û
>W141139544
AWNT01000010
Atribacterota
Atribacteria bacterium JGI OTU-1 [AWNT]
1576
1650
+
Gly
GCC
[ENA]
¡û
>WENV170600991
FUWD010151795
[FUWD] metagenome; unknown
520
594
+
Gly
GCC
[ENA]
¢þ
>WENV170618896
FUWD012991347
[FUWD] metagenome; unknown
726
652
-
Gly
GCC
[ENA]
¢þ
>WENV170626388
FUWD013221090
[FUWD] metagenome; unknown
1356
1282
-
Gly
GCC
[ENA]
¢þ
>WENV170695462
LGVE01097978
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
146
72
-
Gly
GCC
[ENA]
¢þ
>SRA1018715
SRR035082.336875
454 Sequencing (SRP001803)
103
177
+
Gly
GCC
[SRA]
>SRA1026544
SRR035085.224939
454 Sequencing (SRP001806)
170
244
+
Gly
GCC
[SRA]
>SRA1029498
SRR035087.137046
454 Sequencing (SRP001808)
121
195
+
Gly
GCC
[SRA]
>SRA1029966
SRR035087.209149
454 Sequencing (SRP001808)
275
201
-
Gly
GCC
[SRA]
>SRA1031047
SRR035087.364477
454 Sequencing (SRP001808)
17
91
+
Gly
GCC
[SRA]
>SRA1031164
SRR035087.382926
454 Sequencing (SRP001808)
87
161
+
Gly
GCC
[SRA]
>SRA1032365
SRR035087.612587
454 Sequencing (SRP001808)
312
386
+
Gly
GCC
[SRA]
>SRA1032789
SRR035088.103199
454 Sequencing (SRP001809)
158
232
+
Gly
GCC
[SRA]
>SRA1035990
SRR035089.421457
454 Sequencing (SRP001810)
449
523
+
Gly
GCC
[SRA]
>SRA1049957
SRR035095.168237
454 Sequencing (SRP001816)
474
400
-
Gly
GCC
[SRA]
>W1510076779
CDPL01000047
Atribacterota
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5784
5858
+
Gly
GCC
[ENA]
¡û
Identical group No.654398 (11 seq.)
>WENV170601746
FUWD010191354
[FUWD] metagenome; unknown
514
588
+
Gly
GCC
[ENA]
¢þ
>WENV170627294
FUWD013232509
[FUWD] metagenome; unknown
1359
1433
+
Gly
GCC
[ENA]
¢þ
>SRA1017797
SRR035082.197352
454 Sequencing (SRP001803)
88
14
-
Gly
GCC
[SRA]
>SRA1026694
SRR035085.262121
454 Sequencing (SRP001806)
62
136
+
Gly
GCC
[SRA]
>SRA1041884
SRR035091.310269
454 Sequencing (SRP001812)
382
457
+
Gly
GCC
[SRA]
>SRA1042136
SRR035091.344224
454 Sequencing (SRP001812)
20
94
+
Gly
GCC
[SRA]
>SRA1043167
SRR035092.62482
454 Sequencing (SRP001813)
192
266
+
Gly
GCC
[SRA]
>SRA1043832
SRR035092.182353
454 Sequencing (SRP001813)
112
186
+
Gly
GCC
[SRA]
>SRA1044886
SRR035092.366654
454 Sequencing (SRP001813)
288
214
-
Gly
GCC
[SRA]
>SRA1047875
SRR035094.59292
454 Sequencing (SRP001815)
116
42
-
Gly
GCC
[SRA]
>SRA1049449
SRR035095.79463
454 Sequencing (SRP001816)
108
34
-
Gly
GCC
[SRA]
Identical group No.654497 (23 seq.)
>WENV170619662
FUWD013018718
[FUWD] metagenome; unknown
2175
2101
-
Gly
GCC
[ENA]
¢þ
>WENV170624354
FUWD013180297
[FUWD] metagenome; unknown
8347
8421
+
Gly
GCC
[ENA]
¢þ
>WENV170627779
FUWD013237156
[FUWD] metagenome; unknown
2175
2101
-
Gly
GCC
[ENA]
¢þ
>WENV170632640
FUWD013385496
[FUWD] metagenome; unknown
8347
8421
+
Gly
GCC
[ENA]
¢þ
>SRA1029599
SRR035087.150182
454 Sequencing (SRP001808)
200
126
-
Gly
GCC
[SRA]
>SRA1029985
SRR035087.211645
454 Sequencing (SRP001808)
364
438
+
Gly
GCC
[SRA]
>SRA1030802
SRR035087.333239
454 Sequencing (SRP001808)
72
146
+
Gly
GCC
[SRA]
>SRA1031140
SRR035087.379648
454 Sequencing (SRP001808)
181
107
-
Gly
GCC
[SRA]
>SRA1031341
SRR035087.414928
454 Sequencing (SRP001808)
300
226
-
Gly
GCC
[SRA]
>SRA1032421
SRR035087.627641
454 Sequencing (SRP001808)
134
60
-
Gly
GCC
[SRA]
>SRA1032906
SRR035088.127852
454 Sequencing (SRP001809)
123
49
-
Gly
GCC
[SRA]
>SRA1033511
SRR035088.276074
454 Sequencing (SRP001809)
37
111
+
Gly
GCC
[SRA]
>SRA1035022
SRR035089.220959
454 Sequencing (SRP001810)
170
244
+
Gly
GCC
[SRA]
>SRA1036124
SRR035089.449970
454 Sequencing (SRP001810)
321
247
-
Gly
GCC
[SRA]
>SRA1036510
SRR035089.535274
454 Sequencing (SRP001810)
326
402
+
Gly
GCC
[SRA]
>SRA1036701
SRR035089.587740
454 Sequencing (SRP001810)
328
254
-
Gly
GCC
[SRA]
>SRA1047807
SRR035094.45272
454 Sequencing (SRP001815)
155
81
-
Gly
GCC
[SRA]
>SRA1049977
SRR035095.171134
454 Sequencing (SRP001816)
160
86
-
Gly
GCC
[SRA]
>SRA1050007
SRR035095.175467
454 Sequencing (SRP001816)
419
345
-
Gly
GCC
[SRA]
>SRA1050057
SRR035095.185002
454 Sequencing (SRP001816)
203
129
-
Gly
GCC
[SRA]
>SRA1050322
SRR035095.237279
454 Sequencing (SRP001816)
308
382
+
Gly
GCC
[SRA]
>SRA1050560
SRR035095.292435
454 Sequencing (SRP001816)
405
331
-
Gly
GCC
[SRA]
>SRA1050586
SRR035095.296976
454 Sequencing (SRP001816)
220
146
-
Gly
GCC
[SRA]
Identical group No.669726 (3 seq.)
>WENV170645294
JMSV01000021
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
2853
2779
-
Gly
GCC
[ENA]
¢þ
>WENV170645308
JMSV01000044
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
6875
6801
-
Gly
GCC
[ENA]
¢þ
>SRA1049242
SRR035095.43292
454 Sequencing (SRP001816)
466
392
-
Gly
GCC
[SRA]
Identical group No.672281 (12 seq.)
>WENV170625552
FUWD013200123
[FUWD] metagenome; unknown
451
377
-
Gly
GCC
[ENA]
¢þ
>WENV170633779
FUWD013402441
[FUWD] metagenome; unknown
451
377
-
Gly
GCC
[ENA]
¢þ
>SRA1017731
SRR035082.186704
454 Sequencing (SRP001803)
90
16
-
Gly
GCC
[SRA]
>SRA1029090
SRR035087.70837
454 Sequencing (SRP001808)
188
116
-
Gly
GCC
[SRA]
>SRA1033800
SRR035088.359336
454 Sequencing (SRP001809)
217
291
+
Gly
GCC
[SRA]
>SRA1040182
SRR035091.54114
454 Sequencing (SRP001812)
26
100
+
Gly
GCC
[SRA]
>SRA1040985
SRR035091.177885
454 Sequencing (SRP001812)
413
339
-
Gly
GCC
[SRA]
>SRA1041307
SRR035091.226191
454 Sequencing (SRP001812)
142
216
+
Gly
GCC
[SRA]
>SRA1042471
SRR035091.393168
454 Sequencing (SRP001812)
114
40
-
Gly
GCC
[SRA]
>SRA1043131
SRR035092.55002
454 Sequencing (SRP001813)
46
120
+
Gly
GCC
[SRA]
>SRA1048789
SRR035094.248842
454 Sequencing (SRP001815)
300
226
-
Gly
GCC
[SRA]
>SRA1049978
SRR035095.171186
454 Sequencing (SRP001816)
213
287
+
Gly
GCC
[SRA]
Identical group No.710831 (3 seq.)
>WENV170608236
FUWD010905410
[FUWD] metagenome; unknown
434
506
+
Gly
GCC
[ENA]
¢þ
>SRA1050564
SRR035095.293906
454 Sequencing (SRP001816)
69
141
+
Gly
GCC
[SRA]
>SRA1050570
SRR035095.295244
454 Sequencing (SRP001816)
69
141
+
Gly
GCC
[SRA]
Identical group No.711045 (2 seq.)
>WENV170611735
FUWD012385833
[FUWD] metagenome; unknown
146
73
-
Gly
GCC
[ENA]
¢þ
>SRA1049384
SRR035095.67738
454 Sequencing (SRP001816)
126
53
-
Gly
GCC
[SRA]
Identical group No.720399 (1 seq.)
>SRA1049245
SRR035095.43800
454 Sequencing (SRP001816)
219
147
-
Gly
GCC
[SRA]
Identical group No.720419 (1 seq.)
>SRA1049658
SRR035095.112464
454 Sequencing (SRP001816)
456
382
-
Gly
GCC
[SRA]
Identical group No.720430 (1 seq.)
>SRA1049831
SRR035095.144824
454 Sequencing (SRP001816)
279
205
-
Gly
GCC
[SRA]
Identical group No.720431 (1 seq.)
>SRA1049841
SRR035095.146532
454 Sequencing (SRP001816)
430
356
-
Gly
GCC
[SRA]
Identical group No.720433 (2 seq.)
>SRA1049881
SRR035095.152926
454 Sequencing (SRP001816)
176
248
+
Gly
GCC
[SRA]
>SRA1050202
SRR035095.211425
454 Sequencing (SRP001816)
176
248
+
Gly
GCC
[SRA]
Identical group No.720436 (3 seq.)
>WENV180114096
OAPR01152812
[OAPR] marine metagenome; seawater
7
79
+
Gly
GCC
[ENA]
¢þ
>SRA1028408
SRR035086.320227
454 Sequencing (SRP001807)
392
320
-
Gly
GCC
[SRA]
>SRA1049961
SRR035095.168892
454 Sequencing (SRP001816)
148
76
-
Gly
GCC
[SRA]
Identical group No.805253 (2 seq.)
>WENV170612110
FUWD012504878
[FUWD] metagenome; unknown
179
107
-
Gly
GCC
[ENA]
¢þ
>SRA1049812
SRR035095.141672
454 Sequencing (SRP001816)
189
117
-
Gly
GCC
[SRA]
Identical group No.809594 (1 seq.)
>SRA1049933
SRR035095.162628
454 Sequencing (SRP001816)
423
351
-
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK