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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = CAA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162712 (3 seq.)
>SRA1014117
SRR023845.6946
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
50
133
+
Leu
CAA
[SRA]
>SRA1014421
SRR023845.131783
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
17
100
+
Leu
CAA
[SRA]
>SRA1014758
SRR023845.301002
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
50
133
+
Leu
CAA
[SRA]
Identical group No.162717 (1 seq.)
>SRA1015039
SRR023845.430223
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
180
95
-
Leu
CAA
[SRA]
Identical group No.176344 (1 seq.)
>SRA1016385
SRR023846.473843
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
183
98
-
Leu
CAA
[SRA]
Identical group No.193738 (1 seq.)
>SRA1014659
SRR023845.248215
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
191
+
Leu
CAA
[SRA]
Identical group No.193740 (2 seq.)
>SRA1015044
SRR023845.434104
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
279
197
-
Leu
CAA
[SRA]
>SRA1015151
SRR023845.478268
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
278
196
-
Leu
CAA
[SRA]
Identical group No.213176 (3 seq.)
>SRA1015426
SRR023846.52461
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
12
-
Leu
CAA
[SRA]
>SRA1015491
SRR023846.82892
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
12
-
Leu
CAA
[SRA]
>SRA1015985
SRR023846.293907
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
12
-
Leu
CAA
[SRA]
Identical group No.213177 (1 seq.)
>SRA1015847
SRR023846.226501
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
71
153
+
Leu
CAA
[SRA]
Identical group No.213179 (1 seq.)
>SRA1016109
SRR023846.351260
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
205
121
-
Leu
CAA
[SRA]
Identical group No.213182 (1 seq.)
>SRA1016250
SRR023846.418748
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
13
97
+
Leu
CAA
[SRA]
Identical group No.221667 (1 seq.)
>SRA1014212
SRR023845.40978
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
248
165
-
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK