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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = CCA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148192 (1 seq.)
>SRA1016377
SRR023846.470866
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
155
241
+
Trp
CCA
[SRA]
Identical group No.337626 (1 seq.)
>SRA1014724
SRR023845.282941
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
141
217
+
Trp
CCA
[SRA]
Identical group No.337630 (1 seq.)
>SRA1014826
SRR023845.331886
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
-1
-
Trp
CCA
[SRA]
Identical group No.429126 (1 seq.)
>SRA1016232
SRR023846.410339
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
119
43
-
Trp
CCA
[SRA]
Identical group No.697294 (7 seq.)
>SRA1014435
SRR023845.141565
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
22
95
+
Trp
CCA
[SRA]
>SRA1014436
SRR023845.142634
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
185
258
+
Trp
CCA
[SRA]
>SRA1015324
SRR023846.18275
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
176
103
-
Trp
CCA
[SRA]
>SRA1015371
SRR023846.32526
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
108
35
-
Trp
CCA
[SRA]
>SRA1015813
SRR023846.209408
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
92
165
+
Trp
CCA
[SRA]
>SRA1015986
SRR023846.294072
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
102
29
-
Trp
CCA
[SRA]
>SRA1016092
SRR023846.345163
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
108
35
-
Trp
CCA
[SRA]
Identical group No.828354 (1 seq.)
>SRA1015774
SRR023846.193740
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
127
200
+
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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