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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TAC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525552 (1 seq.)
>SRA1014182
SRR023845.30551
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
157
82
-
Val
TAC
[SRA]
Identical group No.525570 (4 seq.)
>SRA1014553
SRR023845.195340
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
264
189
-
Val
TAC
[SRA]
>SRA1015014
SRR023845.423696
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
264
189
-
Val
TAC
[SRA]
>SRA1015171
SRR023845.486524
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
264
189
-
Val
TAC
[SRA]
>SRA1016170
SRR023846.378412
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
109
34
-
Val
TAC
[SRA]
Identical group No.525573 (2 seq.)
>SRA1014633
SRR023845.234694
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
40
113
+
Val
TAC
[SRA]
>SRA1014788
SRR023845.316208
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
40
113
+
Val
TAC
[SRA]
Identical group No.525584 (2 seq.)
>SRA1014907
SRR023845.375687
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
103
31
-
Val
TAC
[SRA]
>SRA1015891
SRR023846.244392
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
164
236
+
Val
TAC
[SRA]
Identical group No.628158 (2 seq.)
>SRA1015749
SRR023846.180476
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
189
265
+
Val
TAC
[SRA]
>SRA1016449
SRR023846.503401
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
161
237
+
Val
TAC
[SRA]
Identical group No.628161 (4 seq.)
>SRA1015803
SRR023846.205604
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
142
-
Val
TAC
[SRA]
>SRA1016470
SRR023846.513795
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
142
-
Val
TAC
[SRA]
>SRA1016481
SRR023846.523923
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
142
-
Val
TAC
[SRA]
>SRA1016516
SRR023846.540166
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
142
-
Val
TAC
[SRA]
Identical group No.697287 (1 seq.)
>SRA1014203
SRR023845.37900
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
221
+
Val
TAC
[SRA]
Identical group No.697293 (1 seq.)
>SRA1014434
SRR023845.140490
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
93
19
-
Val
TAC
[SRA]
Identical group No.761301 (1 seq.)
>SRA1015862
SRR023846.232692
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
185
259
+
Val
TAC
[SRA]
Identical group No.799245 (1 seq.)
>SRA1014142
SRR023845.16717
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
156
86
-
Val
TAC
[SRA]
Identical group No.799253 (1 seq.)
>SRA1015090
SRR023845.457255
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
219
146
-
Val
TAC
[SRA]
Identical group No.828357 (1 seq.)
>SRA1016246
SRR023846.416980
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
8
81
+
Val
TAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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