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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TGC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266341 (1 seq.)
>SRA1015992
SRR023846.296329
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
85
162
+
Ala
TGC
[SRA]
Identical group No.429119 (4 seq.)
>SRA1015603
SRR023846.129782
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
45
118
+
Ala
TGC
[SRA]
>SRA1016219
SRR023846.406697
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
45
118
+
Ala
TGC
[SRA]
>SRA1016458
SRR023846.508371
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
45
118
+
Ala
TGC
[SRA]
>SRA1016473
SRR023846.516113
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
45
118
+
Ala
TGC
[SRA]
Identical group No.525550 (1 seq.)
>SRA1014121
SRR023845.9032
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
213
138
-
Ala
TGC
[SRA]
Identical group No.525582 (1 seq.)
>SRA1014857
SRR023845.346506
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
153
78
-
Ala
TGC
[SRA]
Identical group No.697319 (1 seq.)
>SRA1015091
SRR023845.457255
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
128
54
-
Ala
TGC
[SRA]
Identical group No.799242 (1 seq.)
>SRA1014123
SRR023845.9034
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
174
245
+
Ala
TGC
[SRA]
Identical group No.799252 (1 seq.)
>SRA1014923
SRR023845.382481
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
67
137
+
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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