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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463223 (20 seq.)
>W131167525
ARDI01000011
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
71295
71220
-
Arg
TCT
[ENA]
¡û
>W131231944
AUIW01000002
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
288898
288973
+
Arg
TCT
[ENA]
¡û
>C025915
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
253496
253421
-
Arg
TCT
[Ensembl]
¡û
>C025953
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
599713
599638
-
Arg
TCT
[Ensembl]
¡û
>W08011600
ABVK01000009
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
79828
79903
+
Arg
TCT
[ENA]
¡û
>WENV181227507
OFDN01013551
[OFDN] hot springs metagenome; Water
1238
1163
-
Arg
TCT
[ENA]
¢þ
>WENV181404841
OGCB01000601
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
2569
2494
-
Arg
TCT
[ENA]
¢þ
>WENV181405522
OGCE01000256
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
14137
14062
-
Arg
TCT
[ENA]
¢þ
>WENV181408217
OGCH01000983
[OGCH] hot springs metagenome; hot springs
11580
11655
+
Arg
TCT
[ENA]
¢þ
>C181003555
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
638101
638176
+
Arg
TCT
-
¡û
>C191189998
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1033495
1033570
+
Arg
TCT
-
¡û
>W141820351
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
893344
893419
+
Arg
TCT
[ENA]
¡û
>W141820740
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
544156
544231
+
Arg
TCT
[ENA]
¡û
>ENV09004186
ADKJ01001271
Hot springs metagenome ctg_1106445192081
219
144
-
Arg
TCT
[ENA]
¡û
>C11123206
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
604083
604008
-
Arg
TCT
[Ensembl]
¡û
>C121009733
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1334848
1334923
+
Arg
TCT
[Ensembl]
¡û
>C161028674
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
701042
701117
+
Arg
TCT
-
¡û
>C161067095
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1370956
1371031
+
Arg
TCT
[Ensembl]
¡û
>W121056033
AIJQ01000004
Deinococcota
Thermus parvatiensis RL [AIJQ]
185528
185453
-
Arg
TCT
[ENA]
¡û
>C131002393
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1075662
1075737
+
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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